Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0294
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    58   7e-11
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    22   5.3  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   7.1  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   7.1  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   7.1  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   7.1  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   7.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.1  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 58.4 bits (135), Expect = 7e-11
 Identities = 28/81 (34%), Positives = 45/81 (55%)
 Frame = +3

Query: 423 NGSYKYEYQIADGTHVGEEGYFTNPNTEEASLVKKGWYSYTGADGKVYTVHYWADKTGYH 602
           +G+Y   ++ ++G    E G     + E   +V +G  SYT  DG+  ++ Y AD+ G+ 
Sbjct: 39  DGNYINNFETSNGISHQESGQPKQVDNE-TPVVSQGSDSYTAPDGQQVSITYVADENGFQ 97

Query: 603 AYGDHLPTPPPVPAAIQAALD 665
             G H+PT PP+P  IQ AL+
Sbjct: 98  VQGSHIPTAPPIPPEIQRALE 118


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 387 VPVIKNEMYYGDNGSYKYEY 446
           V V +NE Y GD+    Y+Y
Sbjct: 109 VAVCRNEEYTGDDCQKTYQY 128


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = +3

Query: 231 PKPIQPI-NTYPQNNYAPPQNSYYPQNTY 314
           PK I  + N Y  +NY    N+ Y  N Y
Sbjct: 79  PKIISSLSNNYKYSNYNNYNNNNYNNNNY 107


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = +3

Query: 231 PKPIQPI-NTYPQNNYAPPQNSYYPQNTY 314
           PK I  + N Y  +NY    N+ Y  N Y
Sbjct: 79  PKIISSLSNNYKYSNYNNYNNNNYNNNNY 107


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = +3

Query: 231 PKPIQPI-NTYPQNNYAPPQNSYYPQNTY 314
           PK I  + N Y  +NY    N+ Y  N Y
Sbjct: 79  PKIISSLSNNYKYSNYNNYNNNNYNNNNY 107


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = +3

Query: 231 PKPIQPI-NTYPQNNYAPPQNSYYPQNTY 314
           PK I  + N Y  +NY    N+ Y  N Y
Sbjct: 79  PKIISSLSNNYKYSNYNNYNNNNYNNNNY 107


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +3

Query: 399 KNEMYYGDNGSYKYEYQIADGTHVGEEGYFTN 494
           KNE   G   +YK E  + D   V + G   N
Sbjct: 112 KNENCSGITSAYKIEIDMCDRLWVLDSGLINN 143


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 189  PPIQWKPQNTWNAPP 233
            P + + P N WN PP
Sbjct: 1154 PHLPFTPFNFWNPPP 1168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,349
Number of Sequences: 438
Number of extensions: 5476
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)