Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0293
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   2.0  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   2.6  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   4.6  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
 Frame = +3

Query: 138 RCSYCNRRKWLTSGCLRKWIKPNSMECKHLQRS-IDKNKDTNIDI-VDAILMPEPNSSLN 311
           RC YC  +K L  G  R+ ++      K    S ++   +   D+ ++ I+  E     N
Sbjct: 137 RCQYCRYQKCLNMGMKREAVQEERQRTKDRDTSEVESTSNLQADMPLERIIEAEKRVECN 196


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +1

Query: 526 KDILFYAVTINMHPLNHVLFIVSYIIMAGIGVELRPVKQ 642
           KD+   AV +    LN + ++ +     G+G EL  +++
Sbjct: 583 KDLFLEAVLLRYPDLNKIFYVQTDSSGYGLGAELYQIQE 621


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 111 FNCHLCNINYSDLTVSFIN*IAQI 40
           F C++C +  SD  VSF   IA++
Sbjct: 499 FTCNMCGVECSD-KVSFFLHIARV 521


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,441
Number of Sequences: 336
Number of extensions: 3762
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)