Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0293
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    29   0.94 
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    27   2.9  
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    26   5.0  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    26   5.0  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    26   6.6  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.7  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      25   8.7  

>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 333 WKSKFFITTSVRSLQRYFGKSRGADSICKLNKSNDPTSAFET 458
           W+  FF+T ++RS       +  + +ICK ++S+ P S  +T
Sbjct: 312 WQQAFFLTNTLRSAVVVIVGTAISYAICKHHRSDPPISIIKT 353


>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +3

Query: 270 VDAILMPEPNSSLNTNKFVKLWKSKFFITTSVRSL-QRYFGKSRGADSICKLNKSNDPTS 446
           VD IL P P  + +  + + LW S      S+R L +R   +S   ++  +     D   
Sbjct: 391 VDLILSPRPEHTGSVKEAIDLWHSTHDAEASLRILPRRMIAESSILETWSRSGNQTDYLG 450

Query: 447 AFE 455
           AF+
Sbjct: 451 AFQ 453


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +3

Query: 267 IVDAILMPEPNSSLNTNK---FVKLWKSKFFITTSVRSLQR 380
           I DA+ MPE     N NK   +V  + S+F+  + V  LQR
Sbjct: 443 IHDALTMPEKQREANENKLFRYVNKYTSQFWGQSFVGELQR 483


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +3

Query: 228  QRSIDKNKDTNIDIVDAIL--MPEPNSSLNTNKFVKLWKSKFFI 353
            Q  +D++K+    +V  +L  +PEP S  N N F+   K ++ +
Sbjct: 1089 QERLDEHKEEQEQLVTELLGYLPEPPSKPNANPFLLYQKMQWHV 1132


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 126 ISYERCSYCNRRKWLTSGCLRKWIKPNSMECKHLQRS 236
           +  +RC+ C    + + GC +     + +ECK LQ S
Sbjct: 57  VKTQRCAACKIIHYCSKGCQKADWPFHKLECKALQAS 93


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 255 TNIDIVDAILMPEPNSSLNTNKFVKLWKSKFFITTSV 365
           T +  V  I+   P++ L T    +LW S+  +TT +
Sbjct: 205 TGLSYVSLIIFDLPSNLLMTRADPRLWLSRIQVTTGI 241


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +3

Query: 195  IKPNSMECK-HLQR--SIDKNKDTNIDIVDAILMPEPNSSLNTNKFVKLWKSKFF 350
            +K +S  C+ HL    S   NK   +D++D  L       LNTN F+ L  SKF+
Sbjct: 1440 VKVSSPRCELHLDDLLSAQYNKVLTLDVLDGRL------KLNTNMFLHLIFSKFY 1488


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,037,076
Number of Sequences: 5004
Number of extensions: 62351
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)