Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0293
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 33 0.24
06_03_0968 - 26402154-26403834,26404322-26404383,26404473-264046... 32 0.42
10_01_0168 - 1883380-1883594,1884572-1888325 32 0.56
07_03_1116 - 24084162-24084201,24084481-24084570,24084640-240852... 31 0.98
12_01_0063 - 535364-536085,536226-536439,536989-537981,538238-53... 31 1.3
11_01_0061 - 456521-457389,457534-457659,458377-459307,459564-45... 31 1.3
02_01_0401 + 2927581-2927669,2927795-2927921,2928354-2928437,292... 29 3.9
12_01_1073 + 11135853-11137388,11137627-11137846,11137990-111381... 28 9.1
07_01_0165 + 1159821-1161362 28 9.1
02_04_0113 - 19861904-19862197,19862338-19862496,19862580-198638... 28 9.1
>10_08_0959 - 21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 33.1 bits (72), Expect = 0.24
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Frame = +3
Query: 240 DKNKDTNIDIVDAILMPEPNSSLNTNKFVK--LWKSK----FFITTSVRSLQRYFGKSRG 401
DKNKDT D V+ ++ EP S L +K L K K F +T+S+ Q G
Sbjct: 1212 DKNKDTTSDPVEHNMVEEPKSDLEAGPVIKRLLAKGKSRTVFHLTSSMAEAQILLMNENG 1271
Query: 402 ADSICKLNKSN 434
D + L+++N
Sbjct: 1272 -DRLATLSQNN 1281
>06_03_0968 -
26402154-26403834,26404322-26404383,26404473-26404682,
26404776-26404860,26405461-26405618,26405745-26405868,
26405955-26406123,26406202-26406287,26406379-26406467,
26406564-26406735,26407820-26408193
Length = 1069
Score = 32.3 bits (70), Expect = 0.42
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +3
Query: 126 ISYERCSYCNRRKWLTSGCLRK-WIKPNSMECKHLQRSIDKNK 251
I+ ++CS C R ++ + GC K W + +CK +++S +K
Sbjct: 111 IATKKCSGCKRVRYCSQGCQSKHWQSGHKFKCKQMKKSSPADK 153
>10_01_0168 - 1883380-1883594,1884572-1888325
Length = 1322
Score = 31.9 bits (69), Expect = 0.56
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = -3
Query: 427 LLSLQIESAPRDLPKYLCKD--LTLVVIKNLLFQSFTNLLVFRDELGSGIRIASTISIFV 254
L+ L+IES D+ Y ++ + LV +KNL + NL+ R G R+ S +
Sbjct: 959 LVDLKIESC--DVLVYWPEEEFICLVSLKNLAIEKCNNLIGHRHVSGESTRVPSDQLLPY 1016
Query: 253 SLFLSILRCKCLHSI 209
LSI +CK L I
Sbjct: 1017 LTSLSIRQCKSLEEI 1031
>07_03_1116 -
24084162-24084201,24084481-24084570,24084640-24085220,
24085653-24085822,24086006-24087074
Length = 649
Score = 31.1 bits (67), Expect = 0.98
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = -3
Query: 412 IESAPRDLPKYLCKDLTLVVIKNLLFQSFTNLLVFRDELGSGIRIASTISIFV 254
++ PR + K LC+ + + L +++ L RDEL + +R A+ + FV
Sbjct: 170 VDVKPRPVLKQLCEQMDTAGLLKFLSENWKKLSSLRDELSAALRCATDPARFV 222
>12_01_0063 - 535364-536085,536226-536439,536989-537981,538238-538255,
538601-538860,539950-540073,540978-541310,541447-541531,
541683-541768,541843-541941,542041-542180,542717-543043,
543163-543774,543887-543971,543972-544067,544147-544500,
544536-544559,544597-544707,544811-544894,545468-545546,
546122-546279,546412-546528,546622-546780,546857-546939,
547525-547627,549184-549495
Length = 1925
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 355 RPASDPYKDISVNHEGLIQFANLIRAMTPH 444
+P DPYK +S + G IQF ++ RA P+
Sbjct: 1031 QPGFDPYKIVSASQAGDIQFLDVRRASEPY 1060
>11_01_0061 - 456521-457389,457534-457659,458377-459307,459564-459581,
459924-460183,461834-461918,462587-462919,463053-463137,
463289-463374,463455-463556,463656-463795,464332-464658,
464778-465389,465502-465586,465587-465682,465762-466115,
466212-466322,466426-466509,467086-467164,467742-467899,
468034-468150,468240-468398,468475-468557,469098-469200,
470784-471080
Length = 1899
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 355 RPASDPYKDISVNHEGLIQFANLIRAMTPH 444
+P DPYK +S + G IQF ++ RA P+
Sbjct: 1019 QPGFDPYKIVSASQAGDIQFLDVRRASEPY 1048
>02_01_0401 +
2927581-2927669,2927795-2927921,2928354-2928437,
2928546-2928662,2928754-2928945,2929031-2929234,
2929322-2929809,2930429-2930528,2930686-2930745,
2931007-2931126,2931407-2931751
Length = 641
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/70 (25%), Positives = 34/70 (48%)
Frame = +3
Query: 183 LRKWIKPNSMECKHLQRSIDKNKDTNIDIVDAILMPEPNSSLNTNKFVKLWKSKFFITTS 362
+RK+ E K LQR +++ D ++ + DA++ N+ N VK+ + T+
Sbjct: 90 MRKYRSQLEQEVKKLQRQLEEEIDLHVALADAVMQ---NAGPVLNSSVKIPYKAQELLTN 146
Query: 363 VRSLQRYFGK 392
+ SL+ K
Sbjct: 147 IASLESAVSK 156
>12_01_1073 +
11135853-11137388,11137627-11137846,11137990-11138178,
11138257-11138457,11138547-11139246,11163479-11164106
Length = 1157
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 159 VGYNTNIVHNLCSSSTFNCHLCNINYSD 76
+GY + V + SSS F CH CN N S+
Sbjct: 645 IGYTDDWVSKVNSSSNF-CHACNSNKSN 671
>07_01_0165 + 1159821-1161362
Length = 513
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +3
Query: 177 GCLRKWIKPNSMECKHLQRSI-DKNKDTNIDIVDAILMP 290
G KW +PN + CKH +S+ +++D L P
Sbjct: 279 GIATKWFRPNPICCKHQDQSMCGSGSMDKAELLDVSLQP 317
>02_04_0113 -
19861904-19862197,19862338-19862496,19862580-19863833,
19864086-19864124
Length = 581
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = -1
Query: 618 PNTSHDYITDNK*HMIQGMHVDGDC---VEQNVLLLNADTSLLV*GCVLSQFL 469
PN SH YIT +K Q + V GD ++Q + L + L + G L+Q+L
Sbjct: 382 PNLSHVYITLDKTEAQQSVAVVGDMKNYMKQAFVSLTSIEELTISGSFLTQYL 434
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,308,974
Number of Sequences: 37544
Number of extensions: 359469
Number of successful extensions: 791
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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