Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0293
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92834-9|CAB07386.2| 192|Caenorhabditis elegans Hypothetical pr... 38 0.006
U39651-6|AAL11483.1| 286|Caenorhabditis elegans Temporarily ass... 34 0.12
U39651-5|AAL11482.2| 395|Caenorhabditis elegans Temporarily ass... 34 0.12
AC024796-4|AAK29898.3| 539|Caenorhabditis elegans C-terminal sr... 32 0.38
AB096875-1|BAC76831.1| 539|Caenorhabditis elegans CSK-1 protein. 32 0.38
U53139-11|AAK18936.2| 353|Caenorhabditis elegans Serpentine rec... 31 0.87
Z50806-5|CAB60297.2| 1209|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z50806-3|CAA90691.2| 1224|Caenorhabditis elegans Hypothetical pr... 31 1.2
M13235-1|AAA28129.1| 552|Caenorhabditis elegans protein ( C.ele... 31 1.2
AF209707-1|AAF28335.1| 522|Caenorhabditis elegans phosphoinosit... 31 1.2
AC006708-6|AAF60427.2| 522|Caenorhabditis elegans Phosphoinosit... 31 1.2
U46753-2|AAA85760.1| 894|Caenorhabditis elegans Hypothetical pr... 30 1.5
U88311-6|AAB42347.1| 382|Caenorhabditis elegans Hypothetical pr... 30 2.0
AF125952-5|AAD14697.2| 327|Caenorhabditis elegans Serpentine re... 29 3.5
AC006722-11|AAW88389.1| 327|Caenorhabditis elegans Serpentine r... 29 3.5
Z98853-5|CAB57903.1| 290|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z81543-5|CAB04427.2| 507|Caenorhabditis elegans Hypothetical pr... 28 6.2
>Z92834-9|CAB07386.2| 192|Caenorhabditis elegans Hypothetical
protein F39B2.5 protein.
Length = 192
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = +3
Query: 582 IYCQLYNHGWYWGGITSSEAEXLLAGQHDNVFLVRDSYDSRHILCVSF 725
I LY+ WYWG + AE LL FL+RDS H+ VS+
Sbjct: 7 ICSDLYDCDWYWGDLDWKWAERLLLLCPIGYFLIRDSRSETHLFTVSY 54
>U39651-6|AAL11483.1| 286|Caenorhabditis elegans Temporarily
assigned gene nameprotein 22, isoform b protein.
Length = 286
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +3
Query: 609 WYWGGITSSEAEXLLAGQHDNVFLVRDSYDSRHILCVSFR 728
WY+G I+ AE LL + FLVRDS + L +S R
Sbjct: 192 WYFGRISRERAEDLLLHGREGEFLVRDSESNPGDLSISMR 231
>U39651-5|AAL11482.2| 395|Caenorhabditis elegans Temporarily
assigned gene nameprotein 22, isoform a protein.
Length = 395
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +3
Query: 609 WYWGGITSSEAEXLLAGQHDNVFLVRDSYDSRHILCVSFR 728
WY+G I+ AE LL + FLVRDS + L +S R
Sbjct: 301 WYFGRISRERAEDLLLHGREGEFLVRDSESNPGDLSISMR 340
>AC024796-4|AAK29898.3| 539|Caenorhabditis elegans C-terminal src
kinase protein 1 protein.
Length = 539
Score = 32.3 bits (70), Expect = 0.38
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +3
Query: 600 NHG-WYWGGITSSEAEXLLAGQHDNVFLVRDS--YDSRHILCVSF 725
NH W+ I+ E LL G+ D FLVR+S + LC+SF
Sbjct: 147 NHQPWFHSMISRENTEKLLRGKPDGTFLVRESTNFPGDFTLCMSF 191
>AB096875-1|BAC76831.1| 539|Caenorhabditis elegans CSK-1 protein.
Length = 539
Score = 32.3 bits (70), Expect = 0.38
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +3
Query: 600 NHG-WYWGGITSSEAEXLLAGQHDNVFLVRDS--YDSRHILCVSF 725
NH W+ I+ E LL G+ D FLVR+S + LC+SF
Sbjct: 147 NHQPWFHSMISRENTEKLLRGKPDGTFLVRESTNFPGDFTLCMSF 191
>U53139-11|AAK18936.2| 353|Caenorhabditis elegans Serpentine
receptor, class w protein71 protein.
Length = 353
Score = 31.1 bits (67), Expect = 0.87
Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 3/152 (1%)
Frame = -3
Query: 511 HFIIGLRVCFISIPIPYLVSNADVGSLLLLSLQIESAPRDLPKYLCKDLTLVVIKNLLFQ 332
HF +GL + I IPI +LVS L+ Q+ P D C DL ++
Sbjct: 140 HFKVGLFIFLIFIPISFLVSALFYFGKELIKKQLSFQPGD----KCIDLPANYSEDAYDI 195
Query: 331 SFTNLLVFRDELGSGIRIASTISIFVSLFLSILRCKCLHSIEFGLIHLRRHPLVSHLRRL 152
+ +VF+ + I+ T I V++ IL H + + ++S+ ++
Sbjct: 196 NDYQAVVFQKARKVHMFISGTSDILVAITYPILTILLFHELVKSSNFSNK--ILSNRHQM 253
Query: 151 QYEHRS*L---MFIFYIQLSSM*YKLFRLDSF 65
+ + L M IFYI LSS F L SF
Sbjct: 254 ERQRIGVLVLTMTIFYI-LSSAPAAFFYLSSF 284
>Z50806-5|CAB60297.2| 1209|Caenorhabditis elegans Hypothetical
protein M79.1c protein.
Length = 1209
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +3
Query: 579 AIYCQLYNHGWYWGGITSSEAEXLLAGQHDNVFLVRDSYDSRHILCVSFR 728
A Y L + WY G I+ S++E +L FLVR+S S +S R
Sbjct: 169 APYNSLDKYTWYHGKISRSDSEAILGSGITGSFLVRESETSIGQYTISVR 218
>Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical
protein M79.1b protein.
Length = 1214
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +3
Query: 579 AIYCQLYNHGWYWGGITSSEAEXLLAGQHDNVFLVRDSYDSRHILCVSFR 728
A Y L + WY G I+ S++E +L FLVR+S S +S R
Sbjct: 174 APYNSLDKYTWYHGKISRSDSEAILGSGITGSFLVRESETSIGQYTISVR 223
>Z50806-3|CAA90691.2| 1224|Caenorhabditis elegans Hypothetical
protein M79.1a protein.
Length = 1224
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +3
Query: 579 AIYCQLYNHGWYWGGITSSEAEXLLAGQHDNVFLVRDSYDSRHILCVSFR 728
A Y L + WY G I+ S++E +L FLVR+S S +S R
Sbjct: 184 APYNSLDKYTWYHGKISRSDSEAILGSGITGSFLVRESETSIGQYTISVR 233
>M13235-1|AAA28129.1| 552|Caenorhabditis elegans protein (
C.elegans DNA homologousto the v-abl oncogene. ).
Length = 552
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +3
Query: 579 AIYCQLYNHGWYWGGITSSEAEXLLAGQHDNVFLVRDSYDSRHILCVSFR 728
A Y L + WY G I+ S++E +L FLVR+S S +S R
Sbjct: 35 APYNSLDKYTWYHGKISRSDSEAILGSGITGSFLVRESETSIGQYTISVR 84
>AF209707-1|AAF28335.1| 522|Caenorhabditis elegans phosphoinositide
3-kinase adaptersubunit protein.
Length = 522
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +3
Query: 594 LYNHGWYWGGITSSEAEXLLAGQHDNVFLVRD-SYDSRHILCVSF 725
L GWYW S L+ Q D F+VR+ S + L V F
Sbjct: 15 LMEQGWYWADADRSAVSKALSDQPDGSFIVRNASTPGDYTLSVKF 59
>AC006708-6|AAF60427.2| 522|Caenorhabditis elegans Phosphoinositide
kinase adaptersubunit protein 1 protein.
Length = 522
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +3
Query: 594 LYNHGWYWGGITSSEAEXLLAGQHDNVFLVRD-SYDSRHILCVSF 725
L GWYW S L+ Q D F+VR+ S + L V F
Sbjct: 15 LMEQGWYWADADRSAVSKALSDQPDGSFIVRNASTPGDYTLSVKF 59
>U46753-2|AAA85760.1| 894|Caenorhabditis elegans Hypothetical
protein C34F11.5 protein.
Length = 894
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 597 YNHGWYWGGITSSEAEXLLAGQHDNVFLVR 686
+ W+WG IT +EAE L FLVR
Sbjct: 80 FRQDWFWGMITQTEAEGHLKDCRHGEFLVR 109
>U88311-6|AAB42347.1| 382|Caenorhabditis elegans Hypothetical
protein C10H11.8 protein.
Length = 382
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Frame = +3
Query: 504 MKCQHSKEGHSVLRSHHQHA----SLESCAIYCQLYNH-GWYWGGITSSEAEXLLAGQHD 668
+ C++S +G ++ S + + E+ I L GW W I SSE + G +D
Sbjct: 287 LSCRYSPDGKYIVASGSEKEVYVFNSETMEIKGSLQTECGWNWDAIFSSEGRYIFTGGND 346
Query: 669 NVFLVRDSYDSRHI 710
N + D +++ +
Sbjct: 347 NQVKIWDVENNKKV 360
>AF125952-5|AAD14697.2| 327|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 61 protein.
Length = 327
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 271 TIS-IFVSLFLSILRCKCLHSIEFGLIHLRRHPLVSHLRRLQY 146
TIS ++ ++F SI C CLHS F LI+ R + +LR Y
Sbjct: 6 TISRVYWTIFFSI--CLCLHSSMFLLIYYRTSRTIRNLRWFLY 46
>AC006722-11|AAW88389.1| 327|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 75 protein.
Length = 327
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 271 TIS-IFVSLFLSILRCKCLHSIEFGLIHLRRHPLVSHLRRLQY 146
TIS ++ ++F SI C CLHS F LI+ R + +LR Y
Sbjct: 6 TISRVYWTIFFSI--CLCLHSSMFLLIYYRTSRTIRNLRWFLY 46
>Z98853-5|CAB57903.1| 290|Caenorhabditis elegans Hypothetical
protein R08A2.5 protein.
Length = 290
Score = 28.7 bits (61), Expect = 4.7
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Frame = -3
Query: 424 LSLQIESAPRDLPKYLCKDLTLV--VIKNLLFQSFTNLLVFRDELGSGIRIASTISIFVS 251
++ + + PR P K L V + K +L +F ++ ++L SG+ I S S+F S
Sbjct: 77 IAQMMNTCPRGFPIQDIKGLWHVTRISKRMLHTTFVDIHEAIEKLSSGLSIGSRKSLF-S 135
Query: 250 LFLS--ILRC 227
LF S ++RC
Sbjct: 136 LFKSDPVMRC 145
>Z81543-5|CAB04427.2| 507|Caenorhabditis elegans Hypothetical
protein F49B2.5 protein.
Length = 507
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +3
Query: 609 WYWGGITSSEAEXLLAG--QHDNVFLVRDSYDSRHILCVSFR 728
WY+G + +AE L FLVRDS +H L +S R
Sbjct: 124 WYFGKMRRIDAEKCLLHTLNEHGAFLVRDSESRQHDLSLSVR 165
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,512,196
Number of Sequences: 27780
Number of extensions: 342606
Number of successful extensions: 934
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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