Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0293
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05140.1 68416.m00558 protein kinase family protein contains ...    30   1.4  
At5g63960.1 68418.m08031 DNA-directed DNA polymerase delta catal...    29   3.3  

>At3g05140.1 68416.m00558 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 460

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/61 (34%), Positives = 27/61 (44%)
 Frame = +3

Query: 258 NIDIVDAILMPEPNSSLNTNKFVKLWKSKFFITTSVRSLQRYFGKSRGADSICKLNKSND 437
           N D    +      +S N  KF KLWK +     S++ L  +   S  A  I K NKS D
Sbjct: 56  NADADTDVQCKNHRASSNWGKFFKLWKRR-----SMKRLSSFPPLSGAAPPIIKQNKSAD 110

Query: 438 P 440
           P
Sbjct: 111 P 111


>At5g63960.1 68418.m08031 DNA-directed DNA polymerase delta catalytic
            subunit, putative (POLD1) similar to DNA polymerase delta
            [Glycine max] GI:2895198, OsPol delta large subunit
            [Oryza sativa (japonica cultivar-group) GI:9188570;
            contains Pfam profiles: PF03175 DNA polymerase type B,
            organellar and viral, PF00136 DNA polymerase family B,
            PF03104 DNA polymerase family B, exonuclease domain
          Length = 1081

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
 Frame = -3

Query: 508  FIIGLRVCFISIPIPYLVSNAD--VGSLLLLSLQIESAPRDLPKYLCKDLTLVVIKNLLF 335
            FI  +++ F  +  PYL+ N     G L     Q +       + + +D  L+V KNL+ 
Sbjct: 782  FIKPIKLEFEKVYFPYLLINKKRYAGLLWTNPQQFDKMDTKGIETVRRDNCLLV-KNLVT 840

Query: 334  QSFTNLLVFRDELGSGIRIASTIS 263
            +S   +L+ RD  G+   +  TIS
Sbjct: 841  ESLNKILIDRDVPGAAENVKKTIS 864


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,342,242
Number of Sequences: 28952
Number of extensions: 310559
Number of successful extensions: 749
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)