Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0290
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...    96   5e-21
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    28   1.5  
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    28   1.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   2.0  
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|...    27   3.4  
SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit Rsm2...    26   4.5  
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...    25   7.9  

>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 95.9 bits (228), Expect = 5e-21
 Identities = 57/206 (27%), Positives = 99/206 (48%), Gaps = 2/206 (0%)
 Frame = +1

Query: 85  MAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQES-GKVFGSLSS 261
           MAPP YA + K  ND+  + +  G   L ++T + +GV F   ++ NQ++ G + G L +
Sbjct: 1   MAPPAYAAINKLCNDLLQRDFPVGATLLSVRTTAPNGVVFN--VSGNQDAKGVISGKLET 58

Query: 262 KFAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTN 441
            F  K  GLT ++ W T N L + + + ++ A GL + +  TF+P T  KT  L     +
Sbjct: 59  SFNDKANGLTISQGWTTANVLESKVGLSEQFAPGLHLNVNTTFSPATAAKTAILNLEHQH 118

Query: 442 DTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFAL 621
             +  + +++      + D    + ++G+LAG    +D QK   S     +GY +   ++
Sbjct: 119 PLIHTHASVNALERKFLGDF--TVGHEGFLAGAEFGYDVQKGNVSNYAATIGYLASPLSV 176

Query: 622 HTNVDNGKD-FGGSIYQXVSDKLDCG 696
                N    F  S Y  VS  ++ G
Sbjct: 177 ALQASNNLSVFRASYYHRVSSDVEAG 202


>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +2

Query: 179 PRASLVLNSP-AGS--PPTRKAERFLAAFPPNLQ 271
           P   L +  P AGS  P T+KA     +FPPNLQ
Sbjct: 378 PNTKLSITIPEAGSTDPETQKARAAFESFPPNLQ 411


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 2/112 (1%)
 Frame = +1

Query: 172 LKTKSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDITIQDK 351
           L  ++    +  SG +  +    V   +     + + G       ++DN     I +   
Sbjct: 173 LSIEAGRNAQVESGFSLGESFAHVGNDMQFHLPISNSGAATPRSVHSDNQSQISIEVGRD 232

Query: 352 IAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAV--NTNLDLDLAGPVVDV 501
             A     L G   PQ         T F+  ++     T+LD +L  PV D+
Sbjct: 233 APAAAATDLSGIIGPQMTKSPASSVTHFSTPSMLPIGGTSLDDELLAPVDDL 284


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +1

Query: 370  VTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDL 474
            V++E    P+  T +G+++T+F  DT+ +   L++
Sbjct: 3557 VSIEPLLKPEFFTGSGEVQTTFAKDTITITLPLNI 3591


>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 287

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 181 KSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLAT 330
           +S SG    S + S   +  V  +L S   +K + LTF  +W   + +AT
Sbjct: 176 RSRSGHTLMSQLKSKGRN--VMATLFSPLFIKAFALTFVSEWGDRSQIAT 223


>SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit
           Rsm25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 541 HTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKDF 651
           H Q     A F+K++  LGY+    AL++  DN   +
Sbjct: 164 HDQAQALGAVFTKSDLELGYEMDQNALNSWFDNASQY 200


>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 228 LVGGDPAGEFNTRLALGLQVEFENTKVIALAEDIIG 121
           L GG   G+F++ L  G++  ++ T+    AE +IG
Sbjct: 72  LAGGRGKGQFDSGLRGGVRPVYDATEARMFAEQMIG 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,812,118
Number of Sequences: 5004
Number of extensions: 57040
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)