Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0290
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055... 83 2e-16
03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,205... 55 5e-08
05_06_0213 + 26414613-26414695,26416907-26417077,26417983-264182... 42 4e-04
03_02_0058 - 5316112-5316418,5316497-5316705,5316773-5316859,531... 40 0.001
01_06_0491 - 29763738-29764044,29764266-29764474,29764565-297646... 40 0.002
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487... 31 1.2
12_02_1123 - 26250300-26250362,26251988-26252042,26252128-262522... 30 1.5
01_06_1545 + 38144624-38145301 29 3.5
08_02_1207 - 25302186-25302275,25303089-25303141,25303400-253037... 29 4.7
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306... 28 8.2
07_03_1647 + 28370226-28370369,28370452-28370611,28370704-283708... 28 8.2
05_03_0373 - 13194723-13195847,13196219-13196809 28 8.2
03_02_0578 + 9603118-9605633,9605766-9605781 28 8.2
>01_05_0521 -
22904656-22904962,22905132-22905340,22905432-22905521,
22905624-22905734,22906401-22906468,22906611-22906653
Length = 275
Score = 83.0 bits (196), Expect = 2e-16
Identities = 62/199 (31%), Positives = 99/199 (49%), Gaps = 2/199 (1%)
Frame = +1
Query: 85 MAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSK 264
MAP Y D+GKK D+ + Y K L T + GV T+ T ES VFG L ++
Sbjct: 1 MAPGLYTDIGKKTRDLLYRDYGTH-HKFTLTTCTPEGVTITAAGTRKNES--VFGELQTQ 57
Query: 265 FAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTND 444
+K+ LT K N+++ L T +T+ + GLK L Q ++GKL+ + ++
Sbjct: 58 --LKNKKLTVDVKANSESDLLTTVTVDEFGTPGLKSILSLVVPDQ---RSGKLELQYLHE 112
Query: 445 TVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDF--A 618
+N ++ L+ + P+V+++ V + GV FDT + F+K N AL + D +
Sbjct: 113 YAGINASVGLN-SNPMVNLSGVFGSKELSVGVDVAFDTATSNFTKYNAALSLTNSDLIAS 171
Query: 619 LHTNVDNGKDFGGSIYQXV 675
LH N ++G S Y V
Sbjct: 172 LHLN-NHGDTLIASYYHLV 189
>03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,
2053164-2053250,2053476-2053684,2054115-2054340,
2054473-2054510,2054657-2054714,2055363-2055662,
2055832-2055903,2055988-2056112,2056240-2056312,
2056417-2056521
Length = 1218
Score = 55.2 bits (127), Expect = 5e-08
Identities = 44/164 (26%), Positives = 78/164 (47%)
Frame = +1
Query: 127 DVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKW 306
D+ K Y+F K L T S SG+ T+ T + G + ++ K T K
Sbjct: 729 DLLYKDYNFDQ-KFSLTTTSNSGLGLTA--TGVKIDELFIGDIQTQH--KSGKTTVDVKI 783
Query: 307 NTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAG 486
++++ ++T +T+ D+ GLK + Q K+GKL + +D A+N+ + L +
Sbjct: 784 DSESRVSTTVTV-DEALTGLKTSFSFRVPDQ---KSGKLDLQYLHDHFALNSTIGLT-ST 838
Query: 487 PVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFA 618
P++++AA + AG FD+ A +K N + Y DF+
Sbjct: 839 PLIELAATIGTNELSAGAEVGFDSTSASVTKYNSGICYNKHDFS 882
>05_06_0213 +
26414613-26414695,26416907-26417077,26417983-26418219,
26418543-26418572,26419248-26419282,26421680-26421747,
26423067-26423126,26423310-26423399,26423487-26423695,
26424083-26424383
Length = 427
Score = 42.3 bits (95), Expect = 4e-04
Identities = 33/120 (27%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Frame = +1
Query: 322 LATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDV 501
L T T+ D GLK L F Q K+ K + + + +N + L+ A P+V
Sbjct: 229 LITTFTVHDLGTPGLKGILSIPFPYQ---KSAKAEVQYLHPHAGLNAIVGLN-ANPLVSF 284
Query: 502 AAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDN-GKDFGGSIYQXVS 678
+ V + G FDT F+K N L + + D ++N G S Y VS
Sbjct: 285 SGVFGTGAFAVGTDVAFDTATGDFTKYNAGLSHTTPDLTAALLLNNKGDSLAASYYHKVS 344
>03_02_0058 -
5316112-5316418,5316497-5316705,5316773-5316859,
5316945-5317055,5317536-5317643,5319082-5319149,
5319269-5319320
Length = 313
Score = 40.3 bits (90), Expect = 0.001
Identities = 37/161 (22%), Positives = 71/161 (44%), Gaps = 1/161 (0%)
Frame = +1
Query: 136 SKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTE-KWNT 312
S ++F V K + G + T+ ++ G +SS + K T + K +T
Sbjct: 54 SSSFYFQVIKAVKNISMQIGGDRGLTSTAVKKGGLYTLDVSSVYKYKS---TLVDVKVDT 110
Query: 313 DNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPV 492
++ ++T +T+ D + + VT P + GK++ + ++ + T + + PV
Sbjct: 111 ESNISTTLTVFDVLPSTKLVT--SVKLPDYNS--GKVEMQYFHENASFATAVGMK-PSPV 165
Query: 493 VDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDF 615
V+ + QG G FDT KF+K + A+G D+
Sbjct: 166 VEFSGTAGAQGLAFGAEAGFDTATGKFTKYSAAIGVTKPDY 206
>01_06_0491 -
29763738-29764044,29764266-29764474,29764565-29764654,
29764819-29764905,29765598-29765733,29766036-29766186,
29766334-29766502
Length = 382
Score = 39.9 bits (89), Expect = 0.002
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Frame = +1
Query: 328 TDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAA 507
T IT +D +GLK + F QT GK + + +D ++ + L + P+V+++
Sbjct: 184 TTITTEDLGVSGLKQIVSLPFPYQTA---GKAELQYLHDYAGISLGVGLT-SKPLVNLSG 239
Query: 508 VLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDN-GKDFGGSIYQXVS 678
V + G DT F+K + L + D A ++N G S Y V+
Sbjct: 240 VFGNKSVAVGADVAVDTSTGDFTKYDAGLTINNSDLAADLTLNNKGDSLTASYYHLVN 297
>03_01_0005 +
46370-46454,46962-47071,47381-47545,47672-48463,
48730-48840,48935-49195,49415-49638,49735-49855,
50673-51214,51302-51488,51569-51895,52047-52197,
52287-52424,52918-53013,53276-53357,54411-54679,
54769-54882,55050-55288,55488-55715,55799-55951,
56479-56616,57061-57188,57598-57718,58142-58306,
59486-59633,59772-59898,60025-60118,60119-60268,
60577-60624,60712-60819,61040-61114,61225-61275,
61341-61487,61584-61714,61944-62031,62204-62266,
62336-62582,62830-62981,63056-63126,63214-63370,
63520-63687
Length = 2323
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = -1
Query: 571 TLLFVYQTGCVHQPANPGSLVLL 503
TLLFVYQTG P PG L+LL
Sbjct: 693 TLLFVYQTGEDPPPPAPGGLLLL 715
>12_02_1123 -
26250300-26250362,26251988-26252042,26252128-26252224,
26252364-26253048,26253354-26253721,26253931-26254074,
26254925-26255276
Length = 587
Score = 30.3 bits (65), Expect = 1.5
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +1
Query: 94 PYYADLGKKANDVFSKGYHFGVFKLDLKTKS--ESGVEFTSGITSNQESGKVFGSLSSKF 267
P Y G + D+ SK +H LDL S + G++F SG+ S + V L+ +
Sbjct: 261 PQYVH-GTQLPDLESKFFH-----LDLMHPSVYKVGLQFLSGVISGGNACCVAMLLAFRE 314
Query: 268 AVKDYGLTFTEKWNTDNT 321
A+KDY T+ N D T
Sbjct: 315 AIKDYSTPSTKTLNRDLT 332
>01_06_1545 + 38144624-38145301
Length = 225
Score = 29.1 bits (62), Expect = 3.5
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Frame = -3
Query: 527 QPW*FSTAATSTTGPAKSRSKL---VFTATVSLV---NEVFNFP--VLVPVCGAKVPSRV 372
QP +TAA+S++ P SRSK+ + TVS E N V+VP A P+RV
Sbjct: 29 QPQLAATAASSSSSPFSSRSKIGKDIIDKTVSFTLYQQETMNRTGYVVVPGVDAPAPARV 88
Query: 371 TLRPA 357
+ A
Sbjct: 89 VVSDA 93
>08_02_1207 -
25302186-25302275,25303089-25303141,25303400-25303788,
25303968-25304338,25304362-25304502
Length = 347
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 583 CSWRTLLFVYQTGCVHQPANPGSLVLLQRLQLD 485
CSW + + TG V P+ G L LLQ +QL+
Sbjct: 34 CSWDSGIICSDTGHVPIPSALGDLPLLQTIQLE 66
>09_02_0022 +
3065644-3065953,3066048-3067162,3067261-3067437,
3067535-3067648,3068614-3068718,3068930-3069064,
3069148-3069203,3069277-3069382,3069515-3069631,
3069705-3069831,3069915-3070141,3070164-3070727
Length = 1050
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -3
Query: 434 NEVFNFPVL-VPVCGAKVPSRVTLRPAAILSWIVMSVANVLSVF 306
++V + VL + C + SR+ L PA+ LSW S LS F
Sbjct: 606 DQVLDVKVLKISECAQSLSSRLVLTPASKLSWFGFSENGELSSF 649
>07_03_1647 +
28370226-28370369,28370452-28370611,28370704-28370831,
28372512-28372628,28372729-28372782,28372985-28373075,
28373517-28373688,28374452-28374573,28374726-28374817,
28375331-28375373,28375596-28375656,28376367-28376515,
28376659-28376729,28376805-28376975,28377056-28377124,
28377427-28377528,28377629-28377697,28378060-28378138,
28378238-28378337,28378438-28378513,28378715-28378894,
28379430-28379552,28379634-28379717,28380068-28380252,
28380339-28380477,28380585-28380644,28380926-28381030,
28381332-28381445
Length = 1019
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 162 ENTKVIALAEDIIGLLSKVSIVWGSHVL*LC 70
ENTK L+ + L K SI W H+ LC
Sbjct: 290 ENTKNALLSSAYVNLCCKESIKWTKHISSLC 320
>05_03_0373 - 13194723-13195847,13196219-13196809
Length = 571
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 382 GTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDL 480
GT+ Q T TGK+ +FT + + LDLD+
Sbjct: 537 GTYVAQVTTATGKMLKTFTVEKGDNSLELDLDI 569
>03_02_0578 + 9603118-9605633,9605766-9605781
Length = 843
Score = 27.9 bits (59), Expect = 8.2
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = -3
Query: 653 PKSLPLSTLVWRAKSPDW*PRAKLFLENFAFCVSNWVCTPASQPW*FSTAATSTTGPA 480
PK P + +WR PDW FL +F N V +PA + S ATS T P+
Sbjct: 223 PKVTPNNDTLWRTWLPDW-----TFLHESSFAAHNQV-SPAMIKY-QSGYATSLTAPS 273
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,662,597
Number of Sequences: 37544
Number of extensions: 382139
Number of successful extensions: 974
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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