Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0289
         (600 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    28   0.052
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         24   1.1  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.6  
AF265297-1|AAG17640.1|  125|Tribolium castaneum putative cytochr...    23   2.6  
AF264718-1|AAF75271.1|  125|Tribolium castaneum putative cytochr...    21   7.9  

>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 28.3 bits (60), Expect = 0.052
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 136 CFVPSVQSGDVTGALPPPPTRE 201
           C VP  +  DV   +PPPP  E
Sbjct: 199 CVVPPTEDCDVPSTIPPPPPEE 220


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
 Frame = -1

Query: 195 SRRRGKSSRHVTTLHAWNETPCARR-YYRPRTASAQPSK 82
           SR R   SR         E    R  YYRPRT+  +P +
Sbjct: 206 SRGRHNQSRSKRQPKTGREDQTRRNPYYRPRTSRTEPPR 244


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 45  SSLKNHYFHCFITYSVGRK 101
           SS    +FHC+     GRK
Sbjct: 416 SSFFQQFFHCYCPIKFGRK 434


>AF265297-1|AAG17640.1|  125|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 125

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 478 SADTEPDVKALQE 516
           S DT+PD K+LQE
Sbjct: 31  SDDTKPDYKSLQE 43


>AF264718-1|AAF75271.1|  125|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q6 protein.
          Length = 125

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 179 FPLLRLANLSSLQTR 223
           F LL LANL  +QT+
Sbjct: 7   FILLTLANLQDIQTK 21


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,950
Number of Sequences: 336
Number of extensions: 1708
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)