Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0289
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...    28   1.2  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    28   1.2  
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...    27   1.6  
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi...    26   4.8  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +1

Query: 412 NREDAARSQGAFEVYRRASREPSADTEPDVKALQEQNAVLHRVCRALIAELADVQRD 582
           N+ +  R        RRA+RE     E D K L E NA++ R+ R  I + + ++ D
Sbjct: 38  NKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRLVRLGILDESRMKLD 94


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 587 WRSLCTSASSAMSARHTRCSTAFCSCSAFTSGSVSAEG 474
           W+ L TS +    A++T  ST     SAF + ++  EG
Sbjct: 533 WKKLSTSLNMKEDAQNTAPSTCVKEFSAFVASALDVEG 570


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +1

Query: 412 NREDAARSQGAFEVYRRASREPSADTEPDVKALQEQNAVLHRVCRALIAELADVQRD 582
           N+ +  R        RRA+RE     E D K L E NA++ R+ R  I +   ++ D
Sbjct: 38  NKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRLVRLGILDETRMKLD 94


>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
           Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 484 DTEPDVKALQEQNAVLHRVCRALIAE 561
           D EPD+ A +  N  + R C +LIA+
Sbjct: 222 DVEPDMVASEPLNIHIWRACSSLIAQ 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,820,490
Number of Sequences: 5004
Number of extensions: 27913
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)