Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0289
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0359 + 21350580-21350829,21350990-21351064,21351156-213512... 29 2.2
06_03_0706 + 23719392-23719641,23720337-23720383,23720988-237210... 29 2.8
05_07_0294 - 29038259-29038420,29038526-29038632,29038889-290390... 29 2.8
09_04_0536 + 18402259-18402300,18402441-18402573,18403173-18403792 29 3.8
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 3.8
02_04_0537 - 23734010-23734715,23735326-23735333 28 5.0
02_02_0539 - 11315788-11315841,11316620-11316700,11316728-11317711 28 5.0
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217 28 5.0
01_05_0638 - 23871424-23871974,23872154-23872325 28 5.0
03_02_0921 + 12414932-12416569 27 8.7
>01_05_0359 +
21350580-21350829,21350990-21351064,21351156-21351236,
21352633-21352830,21352930-21353019,21353096-21353253,
21353350-21353472,21354989-21355096,21355530-21355826
Length = 459
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/38 (47%), Positives = 21/38 (55%)
Frame = -2
Query: 200 SRVGGGGRAPVTSPLCTLGTKHRAPADIIDRAPLPPNR 87
S + G +A T P GTK R PADI A LPPN+
Sbjct: 4 SSMQAGEKAVFTIPPELAGTKSRCPADI--PANLPPNQ 39
>06_03_0706 +
23719392-23719641,23720337-23720383,23720988-23721060,
23721323-23721540,23721868-23722170,23722322-23722399,
23723064-23723549,23723875-23724312
Length = 630
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -1
Query: 483 RRGLTRGTPVNLEGTLRPRRVLPIVP 406
RRGL R +P GT PRR+LP +P
Sbjct: 40 RRGLNRASPY---GTAAPRRLLPTLP 62
>05_07_0294 -
29038259-29038420,29038526-29038632,29038889-29039093,
29039173-29039536,29039588-29039772,29039879-29040080,
29040697-29041589
Length = 705
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = -2
Query: 227 GPSSAATIGSRVGGGGRAPVTSPLC-TLGTKHRAPAD-IIDRAPLPPNRVSNETM 69
G SSA + G G GG + +SPL L T + P+ + AP PP R + +
Sbjct: 116 GSSSAGSGGGGGGCGGGSTASSPLTNALPTGNICPSGRVASAAPAPPRRARPDVL 170
>09_04_0536 + 18402259-18402300,18402441-18402573,18403173-18403792
Length = 264
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 242 GCNEA--GPSSAATIGSRVGGGGRAPVTSPLCTLGTKHRAP 126
GC +A GP+ A + + GGGG A + + +C T P
Sbjct: 192 GCRDAATGPARAYAVDAAGGGGGDAVIAAVVCHADTSRWDP 232
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 162 TTLHAWNETPCARRYY 115
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>02_04_0537 - 23734010-23734715,23735326-23735333
Length = 237
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = -2
Query: 230 AGPSSAATIGSRVGGGGRAP-----VTSPLCTLGTKHRAPADIIDRAP 102
A P+ + T G+ GGG R+P +SP + H AP + AP
Sbjct: 108 ASPARSPTAGAAGGGGRRSPASPRTASSPRSSRARAHPAPVSVAAPAP 155
>02_02_0539 - 11315788-11315841,11316620-11316700,11316728-11317711
Length = 372
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 403 FGYNREDAARSQGAFEVYRRASREPSADTEPDVK 504
F + +DAA++ G+ E+YRR P+ + DVK
Sbjct: 297 FQQDADDAAQTAGSCEIYRRDFSGPTGLDKMDVK 330
>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
Length = 504
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = -2
Query: 212 ATIGSRVGGGGRAPVTSPLCTLGTKHRAPADIIDRAPL--PPNRVSNETMK 66
AT GSR GG GR +T+ L AD+ A + PP + T K
Sbjct: 2 ATAGSRKGGRGRKALTAVLDNDANISAGKADVAAAAGILSPPQKAKRATSK 52
>01_05_0638 - 23871424-23871974,23872154-23872325
Length = 240
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 142 VPSVQSGDVTGALPPPPTREPIVAADEGPAS 234
V +V+ + T A+ P EP+VAADE A+
Sbjct: 141 VVTVEPAEQTAAVIDEPVSEPVVAADESVAA 171
>03_02_0921 + 12414932-12416569
Length = 545
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +1
Query: 424 AARSQGAFEVYRRASREPSADTEPDVKALQEQNAVLHRVCRALIAELADVQ 576
A + A++ Y+R R A E D +AL L R C A +A LAD +
Sbjct: 353 AGETSAAWQAYKRMER---AGFEADGRALDTLARGLCRQCAANVAALADAR 400
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,099,903
Number of Sequences: 37544
Number of extensions: 254785
Number of successful extensions: 1434
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1430
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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