Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0289
(600 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50942| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_51109| Best HMM Match : ATP-cone (HMM E-Value=0.76) 30 1.2
SB_28307| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_43339| Best HMM Match : SAC3_GANP (HMM E-Value=1.8e-09) 28 5.0
SB_55897| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37) 28 6.6
SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11) 28 6.6
SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15) 28 6.6
SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30) 28 6.6
SB_39271| Best HMM Match : Secretin_N (HMM E-Value=2.4) 28 6.6
SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_31551| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37) 28 6.6
SB_27585| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29) 28 6.6
SB_14634| Best HMM Match : ATP-synt_E (HMM E-Value=2.6) 28 6.6
SB_12900| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_9508| Best HMM Match : Secretin_N (HMM E-Value=1.8) 28 6.6
SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_18330| Best HMM Match : rve (HMM E-Value=1.2e-16) 27 8.8
>SB_50942| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 638
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 179 RAPVTSPLCTLGTKHRAPADIIDRAPLPPNRV 84
+ P P GT HR PA+ R +P NRV
Sbjct: 508 QTPTNFPESVPGTHHRVPAEATGRVDVPDNRV 539
>SB_51109| Best HMM Match : ATP-cone (HMM E-Value=0.76)
Length = 250
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 179 RAPVTSPLCTLGTKHRAPADIIDRAPLPPNRV 84
+ P P GT HR PA+ R +P NRV
Sbjct: 214 QTPTNFPESVPGTHHRVPAEATGRVDVPDNRV 245
>SB_28307| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 761
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = -2
Query: 233 EAGPSSAATIGSRVGGGGRAPVTSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVF 54
+ P AAT V G + V+SP T T+ P+D P P R++ E + + +
Sbjct: 703 DQSPVPAAT----VPGPDPSSVSSPAATSATEKPPPSDKRPETPARPKRITREPVYLKDY 758
Query: 53 QRR 45
RR
Sbjct: 759 VRR 761
>SB_43339| Best HMM Match : SAC3_GANP (HMM E-Value=1.8e-09)
Length = 657
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 172 GALPPPPTREPIVAADE 222
G LP PPT EP+++ DE
Sbjct: 582 GPLPTPPTHEPVLSFDE 598
>SB_55897| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37)
Length = 732
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 20 ISGRSFRAIVAEKPLLSLFH 79
+ GR F I KPLLSLFH
Sbjct: 374 VFGRDFDIITDHKPLLSLFH 393
>SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1626
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -2
Query: 599 TXNSWRSLCTSASSAMSARHTRCSTAFCSCSAFTSGSVSAEGSREARR*TSK 444
T NS S SSA S+ + +TAF +CS+ S ++A + T K
Sbjct: 232 TENSTSKRTKSLSSASSSAASLATTAFSTCSSSGSTFIAAHQLKSGNSGTKK 283
>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
Length = 3037
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -2
Query: 128 PADIIDRAPLPPNRVSNETMKVVVFQRRSRETI 30
PA + +++PLP N ++E +++ QRR E +
Sbjct: 2409 PAKLPNQSPLPNNASASEIQRILENQRREEELL 2441
>SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1829
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 20 ISGRSFRAIVAEKPLLSLFH 79
+ GR F I KPLLSLFH
Sbjct: 1317 VFGRDFDIITDHKPLLSLFH 1336
>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
Length = 710
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 20 ISGRSFRAIVAEKPLLSLFH 79
+ GR F I KPLLSLFH
Sbjct: 79 VFGRDFDIITDHKPLLSLFH 98
>SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30)
Length = 1280
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 20 ISGRSFRAIVAEKPLLSLFH 79
+ GR F I KPLLSLFH
Sbjct: 608 VFGRDFDIITDHKPLLSLFH 627
>SB_39271| Best HMM Match : Secretin_N (HMM E-Value=2.4)
Length = 300
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 20 ISGRSFRAIVAEKPLLSLFH 79
+ GR F I KPLLSLFH
Sbjct: 259 VFGRDFDIITDHKPLLSLFH 278
>SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1089
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 20 ISGRSFRAIVAEKPLLSLFH 79
+ GR F I KPLLSLFH
Sbjct: 568 VFGRDFDIITDHKPLLSLFH 587
>SB_31551| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37)
Length = 429
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 20 ISGRSFRAIVAEKPLLSLFH 79
+ GR F I KPLLSLFH
Sbjct: 347 VFGRDFDIITDHKPLLSLFH 366
>SB_27585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 20 ISGRSFRAIVAEKPLLSLFH 79
+ GR F I KPLLSLFH
Sbjct: 167 VFGRDFDIITDHKPLLSLFH 186
>SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)
Length = 1544
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 20 ISGRSFRAIVAEKPLLSLFH 79
+ GR F I KPLLSLFH
Sbjct: 773 VFGRDFDIITDHKPLLSLFH 792
>SB_14634| Best HMM Match : ATP-synt_E (HMM E-Value=2.6)
Length = 309
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 20 ISGRSFRAIVAEKPLLSLFH 79
+ GR F I KPLLSLFH
Sbjct: 167 VFGRDFDIITDHKPLLSLFH 186
>SB_12900| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 883
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 20 ISGRSFRAIVAEKPLLSLFH 79
+ GR F I KPLLSLFH
Sbjct: 608 VFGRDFDIITDHKPLLSLFH 627
>SB_9508| Best HMM Match : Secretin_N (HMM E-Value=1.8)
Length = 391
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 20 ISGRSFRAIVAEKPLLSLFH 79
+ GR F I KPLLSLFH
Sbjct: 241 VFGRDFDIITDHKPLLSLFH 260
>SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = -2
Query: 101 LPPNRVSNETMKVVVFQRR 45
LP +R+S +T++VVVF RR
Sbjct: 67 LPLHRISKKTIRVVVFHRR 85
>SB_18330| Best HMM Match : rve (HMM E-Value=1.2e-16)
Length = 997
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -2
Query: 194 VGGGGRAPVTSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRR 45
V G V+SP T T+ P+D P P R++ E + + + RR
Sbjct: 948 VPGPDPPSVSSPAATSATEKPPPSDKRPETPARPKRITREPVYLKDYVRR 997
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,178,576
Number of Sequences: 59808
Number of extensions: 252249
Number of successful extensions: 867
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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