Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0289
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical pr...    32   0.36 
AF039052-9|AAF98625.1|  302|Caenorhabditis elegans Hypothetical ...    29   2.5  
U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    28   4.4  
AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical ...    28   4.4  
Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical p...    27   7.7  
Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical p...    27   7.7  
Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical p...    27   7.7  
Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical p...    27   7.7  
Z68108-7|CAF31487.1| 1692|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AY390553-1|AAQ94965.1|  239|Caenorhabditis elegans SMA-9 protein.      27   7.7  
AY390541-1|AAQ94953.1|  521|Caenorhabditis elegans SMA-9 class I...    27   7.7  
AY390540-1|AAQ94952.1|  405|Caenorhabditis elegans SMA-9 class I...    27   7.7  
AY390539-1|AAQ94951.1|  465|Caenorhabditis elegans SMA-9 class I...    27   7.7  
AY390538-1|AAQ94950.1|  591|Caenorhabditis elegans SMA-9 class I...    27   7.7  

>Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical
           protein M02G9.3 protein.
          Length = 294

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = -2

Query: 593 NSWRSLCTSASSAMSARHTRCSTAFCSCSAFTSGSVSAEGSREARR*TSKAPCDRAASS 417
           NS ++ C+SA + M+ R T  +T   SC++ + G  ++  S          PC+R+ +S
Sbjct: 178 NSCQNQCSSACTTMTCRQTCQNTCLGSCNSCSGGGCNSNNSNL----VVVTPCERSCNS 232


>AF039052-9|AAF98625.1|  302|Caenorhabditis elegans Hypothetical
           protein T22D1.2 protein.
          Length = 302

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 169 TGALPPPPTREPIVAADEGPAS 234
           TG+ PPPPT EP   + EG AS
Sbjct: 134 TGSPPPPPTGEPQDLSGEGNAS 155



 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 169 TGALPPPPTREPIVAADEGPAS 234
           TG+ PPPPT EP   + EG AS
Sbjct: 165 TGSPPPPPTGEPQDLSTEGNAS 186



 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 169 TGALPPPPTREPIVAADEGPAS 234
           TG+ PPPPT EP   + EG AS
Sbjct: 258 TGSPPPPPTGEPQDLSGEGNAS 279


>U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical
           protein ZK84.1 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = -2

Query: 233 EAGPSSAATIGSRVGGGGRAPVTSPLCTLGTKHRAPADIIDRAP 102
           EA   SAA IG        AP+ +P     T   APA   + AP
Sbjct: 491 EAPSDSAAPIGPAASEPAPAPIEAPATDAATLETAPAPAAEPAP 534


>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical
           protein C10C6.1 protein.
          Length = 1565

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -2

Query: 506 AFTSGSVSAEGSREARR*TSKAPCD 432
           A TSG+ SA+G+  A + T++APC+
Sbjct: 526 ATTSGTTSAKGAGSAWQETNRAPCE 550


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
           protein.
          Length = 1565

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -2

Query: 506 AFTSGSVSAEGSREARR*TSKAPCD 432
           A TSG+ SA+G+  A + T++APC+
Sbjct: 526 ATTSGTTSAKGAGSAWQETNRAPCE 550


>AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical
           protein ZC190.4 protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = -2

Query: 149 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCY 15
           +GT+ +   DIID   +P N +S++ +  +++  R  ET++H+ +
Sbjct: 287 VGTR-KTSTDIIDGFNVPSNMISDDNLPALIY--RVIETLNHMIF 328


>Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical
            protein T05A10.1a protein.
          Length = 2066

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
 Frame = -1

Query: 231  SGPLVCSDDRFASRRRGKSS------RHVTTLHAWNETPCARRYYRPRTA 100
            + P+V S   F+ R+R +SS       H   L  WN       +Y P+ A
Sbjct: 1855 TSPIVSSSTNFSYRKRSESSLSGSSPTHTKKLMVWNPPLAEPSFYSPKAA 1904


>Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical
            protein T05A10.1f protein.
          Length = 2048

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
 Frame = -1

Query: 231  SGPLVCSDDRFASRRRGKSS------RHVTTLHAWNETPCARRYYRPRTA 100
            + P+V S   F+ R+R +SS       H   L  WN       +Y P+ A
Sbjct: 1837 TSPIVSSSTNFSYRKRSESSLSGSSPTHTKKLMVWNPPLAEPSFYSPKAA 1886


>Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical
            protein T05A10.1e protein.
          Length = 2101

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
 Frame = -1

Query: 231  SGPLVCSDDRFASRRRGKSS------RHVTTLHAWNETPCARRYYRPRTA 100
            + P+V S   F+ R+R +SS       H   L  WN       +Y P+ A
Sbjct: 1890 TSPIVSSSTNFSYRKRSESSLSGSSPTHTKKLMVWNPPLAEPSFYSPKAA 1939


>Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical
            protein T05A10.1d protein.
          Length = 2134

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
 Frame = -1

Query: 231  SGPLVCSDDRFASRRRGKSS------RHVTTLHAWNETPCARRYYRPRTA 100
            + P+V S   F+ R+R +SS       H   L  WN       +Y P+ A
Sbjct: 1923 TSPIVSSSTNFSYRKRSESSLSGSSPTHTKKLMVWNPPLAEPSFYSPKAA 1972


>Z68108-7|CAF31487.1| 1692|Caenorhabditis elegans Hypothetical protein
            T05A10.1c protein.
          Length = 1692

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
 Frame = -1

Query: 231  SGPLVCSDDRFASRRRGKSS------RHVTTLHAWNETPCARRYYRPRTA 100
            + P+V S   F+ R+R +SS       H   L  WN       +Y P+ A
Sbjct: 1481 TSPIVSSSTNFSYRKRSESSLSGSSPTHTKKLMVWNPPLAEPSFYSPKAA 1530


>AY390553-1|AAQ94965.1|  239|Caenorhabditis elegans SMA-9 protein.
          Length = 239

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
 Frame = -1

Query: 231 SGPLVCSDDRFASRRRGKSS------RHVTTLHAWNETPCARRYYRPRTA 100
           + P+V S   F+ R+R +SS       H   L  WN       +Y P+ A
Sbjct: 28  TSPIVSSSTNFSYRKRSESSLSGSSPTHTKKLMVWNPPLAEPSFYSPKAA 77


>AY390541-1|AAQ94953.1|  521|Caenorhabditis elegans SMA-9 class Ib
           protein.
          Length = 521

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
 Frame = -1

Query: 231 SGPLVCSDDRFASRRRGKSS------RHVTTLHAWNETPCARRYYRPRTA 100
           + P+V S   F+ R+R +SS       H   L  WN       +Y P+ A
Sbjct: 310 TSPIVSSSTNFSYRKRSESSLSGSSPTHTKKLMVWNPPLAEPSFYSPKAA 359


>AY390540-1|AAQ94952.1|  405|Caenorhabditis elegans SMA-9 class Ia
           protein.
          Length = 405

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
 Frame = -1

Query: 231 SGPLVCSDDRFASRRRGKSS------RHVTTLHAWNETPCARRYYRPRTA 100
           + P+V S   F+ R+R +SS       H   L  WN       +Y P+ A
Sbjct: 194 TSPIVSSSTNFSYRKRSESSLSGSSPTHTKKLMVWNPPLAEPSFYSPKAA 243


>AY390539-1|AAQ94951.1|  465|Caenorhabditis elegans SMA-9 class Ia
           protein.
          Length = 465

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
 Frame = -1

Query: 231 SGPLVCSDDRFASRRRGKSS------RHVTTLHAWNETPCARRYYRPRTA 100
           + P+V S   F+ R+R +SS       H   L  WN       +Y P+ A
Sbjct: 254 TSPIVSSSTNFSYRKRSESSLSGSSPTHTKKLMVWNPPLAEPSFYSPKAA 303


>AY390538-1|AAQ94950.1|  591|Caenorhabditis elegans SMA-9 class Ia
           protein.
          Length = 591

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
 Frame = -1

Query: 231 SGPLVCSDDRFASRRRGKSS------RHVTTLHAWNETPCARRYYRPRTA 100
           + P+V S   F+ R+R +SS       H   L  WN       +Y P+ A
Sbjct: 380 TSPIVSSSTNFSYRKRSESSLSGSSPTHTKKLMVWNPPLAEPSFYSPKAA 429


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,596,908
Number of Sequences: 27780
Number of extensions: 174414
Number of successful extensions: 712
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)