Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0289
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   3.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   4.0  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   5.3  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   5.3  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   5.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.0  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   9.2  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 236 NEAGPSSAATIGSRVGGGGRAPVTSP 159
           N+  PSS   I +++G GG  P+  P
Sbjct: 84  NDGVPSSLNVISNKIGNGG--PLLEP 107


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 45  SSLKNHYFHCFITYSVGRK 101
           SS    +FHC+     GRK
Sbjct: 420 SSFFQQFFHCYCPVRFGRK 438


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
          protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 24 VGDRFARSSLKNHYFHCFI 80
          + +  A   L+N Y+ CFI
Sbjct: 32 IDEILANDRLRNQYYDCFI 50


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
          protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 24 VGDRFARSSLKNHYFHCFI 80
          + +  A   L+N Y+ CFI
Sbjct: 32 IDEILANDRLRNQYYDCFI 50


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 224 PSSAATIGSRVGGGGR 177
           PSS   I  ++G GGR
Sbjct: 91  PSSLNVISEKIGNGGR 106


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -2

Query: 188 GGGRAPVTSPLCTLGTKHRAPADIIDRAPL 99
           G    P ++   T GTK R     +DR P+
Sbjct: 322 GSREYPTSNATDTDGTKERTEEVALDRTPV 351


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/40 (22%), Positives = 23/40 (57%)
 Frame = +1

Query: 400 GFGYNREDAARSQGAFEVYRRASREPSADTEPDVKALQEQ 519
           G G N +   ++   ++VY R+  + ++D   D+K ++++
Sbjct: 16  GAGQNNKGWWKNAIFYQVYPRSFMDSNSDGIGDLKGIKDK 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,960
Number of Sequences: 438
Number of extensions: 1996
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)