Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0289
(600 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 31 0.58
At2g29125.1 68415.m03540 expressed protein 31 0.58
At1g07490.1 68414.m00802 expressed protein 31 0.77
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ... 29 2.4
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 29 3.1
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi... 28 5.4
At4g33520.3 68417.m04762 metal-transporting P-type ATPase, putat... 27 7.2
At4g33520.2 68417.m04761 metal-transporting P-type ATPase, putat... 27 7.2
At3g47910.1 68416.m05224 expressed protein low similarity to non... 27 7.2
At2g36720.1 68415.m04505 PHD finger transcription factor, putative 27 7.2
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 27 7.2
At4g26450.1 68417.m03805 expressed protein 27 9.5
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 27 9.5
At1g63480.1 68414.m07178 DNA-binding family protein contains a A... 27 9.5
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 31.1 bits (67), Expect = 0.58
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -2
Query: 149 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYTSHV 3
LG +H PA +I+R P PP +S +++++F E +CY S V
Sbjct: 231 LGLEHVLPA-VIERIPPPPG-ISESPLRMLLFDSFFNEYKGVICYVSVV 277
>At2g29125.1 68415.m03540 expressed protein
Length = 115
Score = 31.1 bits (67), Expect = 0.58
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = -2
Query: 584 RSLCTSASSAMS-----ARHTRCSTAFCSCSAFTSGSVSAEGSREARR*TSKA 441
RS TSASS S + T+CS S S+ +S S+S SR+ RR +S +
Sbjct: 25 RSFSTSASSTKSPIFVRSSSTKCSVPSSSSSSSSSSSISRSFSRKERRSSSSS 77
>At1g07490.1 68414.m00802 expressed protein
Length = 107
Score = 30.7 bits (66), Expect = 0.77
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -2
Query: 584 RSLCTSASSAMSARHTRCSTAFCSCSAFTSGSVSAEGSREAR 459
RS TSASS+ + R S+ CS + +S S+S S++ +
Sbjct: 30 RSFSTSASSSKAPAFVRSSSTKCSVPSSSSSSISRSSSKKEK 71
>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
F-box family protein
Length = 379
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -2
Query: 170 VTSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 27
V S LC LG+ R PAD I+ L R+ M +V R S + I+
Sbjct: 52 VISILCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPKAIA 98
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = -2
Query: 224 PSSAATIGSRVGGGGRAPVTSPLCTLGTKHRAPADIIDRAPLPP 93
P S A+ S G G RAP +S G++ R P R PLPP
Sbjct: 507 PRSLASSRSARGAGSRAPSSSAKRASGSRGRRP-----RPPLPP 545
>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
like protein A, Arabidopsis thaliana, gb:Q07970
Length = 790
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 113 DRAPLPPNRVSNETMKVVVFQRRSRET 33
+RAPLP V E + + F +R +ET
Sbjct: 7 NRAPLPSPNVKKEALSSIPFDKRRKET 33
>At4g33520.3 68417.m04762 metal-transporting P-type ATPase, putative
(PAA1) nearly identical to gi:2668492; contains Pfam
heavy-metal-associated domain PF00403
Length = 949
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 245 NGCNEAGPSSAATIGSRVGGG-GRAPVTSPLCTLGTK 138
+G N+A +++ +G +GGG G A SP+ +G +
Sbjct: 808 DGINDAAALASSNVGVAMGGGAGAASEVSPVVLMGNR 844
>At4g33520.2 68417.m04761 metal-transporting P-type ATPase, putative
(PAA1) nearly identical to gi:2668492; contains Pfam
heavy-metal-associated domain PF00403
Length = 949
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 245 NGCNEAGPSSAATIGSRVGGG-GRAPVTSPLCTLGTK 138
+G N+A +++ +G +GGG G A SP+ +G +
Sbjct: 808 DGINDAAALASSNVGVAMGGGAGAASEVSPVVLMGNR 844
>At3g47910.1 68416.m05224 expressed protein low similarity to
nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
GI:189036; contains Pfam profiles PF04780: Protein of
unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1290
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 152 TLGTKHRAPADIIDRAPLPPNRVSNETMKVVV 57
T+G+ HR+ AD ++ +PLP V + + +V
Sbjct: 972 TIGSDHRSNADSVEHSPLPVAPVGDHSEADIV 1003
>At2g36720.1 68415.m04505 PHD finger transcription factor, putative
Length = 1007
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = -2
Query: 239 CNEAGPSSAATIGSRVGGGGRAPVTSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKV 63
C+E S A+ +R A +TSP+ + R P++ +P+ + + N T K+
Sbjct: 397 CSEVETSQASLAATRTSTSAPACITSPVKSRLKITRKPSESTSISPVFMSSLGNSTRKI 455
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 145 PSVQSGDVTGALPPPPTREPIVAADEGPAS 234
P + T A PPP T P V+A + PAS
Sbjct: 40 PPTTAAPPTTAAPPPTTTTPPVSAAQPPAS 69
>At4g26450.1 68417.m03805 expressed protein
Length = 1248
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 522 VLLLQRLHIWLRVRRGLTRGTPVNLEGTLRPRRVL 418
VL Q L W R+RR L + T N+E + +R L
Sbjct: 775 VLKGQGLRKWRRIRRDLVKDTSANMENSKALKRGL 809
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 236 NEAGPSSAATIGSRVGGGGRAPVTSPLCTL 147
N+ +++AT G VGGGG LC+L
Sbjct: 19 NDGAATASATPGIGVGGGGDGVTHGALCSL 48
>At1g63480.1 68414.m07178 DNA-binding family protein contains a AT
hook motif (DNA binding motifs with a preference for A/T
rich regions), Pfam:PF02178
Length = 361
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +1
Query: 142 VPSVQSGDVTGALPPPPTREPIVAADEG 225
V S DV PPPP EP+V G
Sbjct: 76 VSSASDADVQPPPPPPPPEEPMVKRKRG 103
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,152,192
Number of Sequences: 28952
Number of extensions: 163913
Number of successful extensions: 563
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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