Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0191
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    28   0.11 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.6  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   7.4  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -2

Query: 228 IGVVGELGRPFY---ILLDAVDDMHVLDLHHVTFQFVFS*RAF 109
           +G + E+ R FY   + ++ V +  + D  HVTF+  F  RAF
Sbjct: 145 MGQIREVARHFYHKELQIELVREEILFDTVHVTFKLTFDNRAF 187


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 316 YAIAYNCKYDDKKKSHQVFVWILSRNKKL 402
           + + Y      K KS  + VW LSR ++L
Sbjct: 573 FLLEYRGPVTMKGKSEPMNVWFLSREREL 601


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 316 YAIAYNCKYDDKKKSHQVFVWILSRNKKL 402
           + + Y      K KS  + VW LSR ++L
Sbjct: 573 FLLEYRGPVTMKGKSEPMNVWFLSREREL 601


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 407 ATLKLLSIISSRNTPKR*TLRNLCIP 484
           A L L +I+  RNTP+     N C P
Sbjct: 90  AELALRNIVQFRNTPEVHQAINTCQP 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,098
Number of Sequences: 438
Number of extensions: 3936
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)