Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0191
         (784 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58070.1 68418.m07267 lipocalin, putative similar to temperat...    57   2e-08
At4g18760.1 68417.m02772 leucine-rich repeat family protein cont...    35   0.070
At5g14890.1 68418.m01746 NHL repeat-containing protein contains ...    29   2.6  
At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor, pu...    29   2.6  
At5g64816.2 68418.m08154 expressed protein                             29   4.6  
At5g64816.1 68418.m08153 expressed protein                             29   4.6  
At2g27110.2 68415.m03258 far-red impaired responsive protein, pu...    29   4.6  
At2g27110.1 68415.m03257 far-red impaired responsive protein, pu...    29   4.6  
At5g36740.1 68418.m04402 PHD finger family protein                     28   6.1  
At5g36670.1 68418.m04388 PHD finger family protein                     28   6.1  
At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative...    28   6.1  
At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) simil...    28   8.0  
At4g37890.2 68417.m05359 zinc finger (C3HC4-type RING finger) fa...    28   8.0  
At4g37890.1 68417.m05358 zinc finger (C3HC4-type RING finger) fa...    28   8.0  

>At5g58070.1 68418.m07267 lipocalin, putative similar to temperature
           stress-induced lipocalin [Triticum aestivum] GI:18650668
          Length = 186

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 3/163 (1%)
 Frame = +1

Query: 16  DLKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKLEGD-VVKVKNVHIIDGVKK 189
           +++ V   N+  Y G WYEI+ FP+  + KNG  + A Y L  D  + V N    +G + 
Sbjct: 6   EMEVVKGLNVERYMGRWYEIASFPSRFQPKNGVDTRATYTLNPDGTIHVLNETWSNGKRG 65

Query: 190 YIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYINYAIAYNCKYDDKKKSHQV 369
           +IEG+A   D  +  AKL V F          +  +  DY    I  + ++    +  + 
Sbjct: 66  FIEGSAYKADPKSDEAKLKVKFYVPPFL---PIIPVTGDYWVLYIDPDYQHALIGQPSRS 122

Query: 370 FVWILSRNKKLEGDA-KTAVDNFIKEHSKEIDSSKLVHTDFSE 495
           ++WILSR  ++E +  K  V+  ++E     D SKL  T  S+
Sbjct: 123 YLWILSRTAQMEEETYKQLVEKAVEE---GYDISKLHKTPQSD 162


>At4g18760.1 68417.m02772 leucine-rich repeat family protein
           contains leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611
          Length = 431

 Score = 34.7 bits (76), Expect = 0.070
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
 Frame = +2

Query: 203 RPSSPTTPIKPQS*QSLLSLEKYHAMDQFKSWRLTILTTPSLTTANT------MTRKSLI 364
           +PSS ++P+ P+  ++L SL      D       T  T+ S+ T +T      +T  S  
Sbjct: 40  KPSSSSSPLDPKQLKALESLNIPTVKDPCNHRPTTKSTSSSVVTCDTSSPFRLVTSISFT 99

Query: 365 KCSSGSSLETRSLKATLKLLSIISSRNTP 451
            CS+  S+ T +L+A    L+ +S  N P
Sbjct: 100 NCSTDLSISTTALRALSPSLTSLSFLNCP 128


>At5g14890.1 68418.m01746 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 754

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 296 WRLTILTTPSLTTANTMTRKSLIKCSSGSSLET 394
           W L   TT + TT + ++ +S++K  SG ++ET
Sbjct: 50  WSLQTSTTTTTTTKSGVSSRSMVKYESGYNMET 82



 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 664 WLWSLQSGSTNKTKTYVNLNTVVTIQFDS 578
           WLWSLQ+ +T  T T   +++   ++++S
Sbjct: 48  WLWSLQTSTTTTTTTKSGVSSRSMVKYES 76


>At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor,
           putative (AVDE1) similar to EST gb|N37612
          Length = 462

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 28  VNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNV 165
           V NFN++ + G WY I+   N +     C   E+  EGD   V N+
Sbjct: 204 VQNFNISDFNGKWY-ITSGLNPTFDAFDCQLHEFHTEGDNKLVGNI 248


>At5g64816.2 68418.m08154 expressed protein
          Length = 130

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 385 RGSRRTLDETFSCHRICSCKR 323
           RG  ++ DE F C R+C+ KR
Sbjct: 38  RGREKSSDEIFVCERVCTSKR 58


>At5g64816.1 68418.m08153 expressed protein
          Length = 130

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 385 RGSRRTLDETFSCHRICSCKR 323
           RG  ++ DE F C R+C+ KR
Sbjct: 38  RGREKSSDEIFVCERVCTSKR 58


>At2g27110.2 68415.m03258 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 851

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 397 KLEGDAKTAVDNFIKEHSKEIDSSKLVH 480
           +L+G  K  V  F+KEH+  + SS ++H
Sbjct: 115 ELQGHEKWVVTKFVKEHTHGLASSNMLH 142


>At2g27110.1 68415.m03257 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 851

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 397 KLEGDAKTAVDNFIKEHSKEIDSSKLVH 480
           +L+G  K  V  F+KEH+  + SS ++H
Sbjct: 115 ELQGHEKWVVTKFVKEHTHGLASSNMLH 142


>At5g36740.1 68418.m04402 PHD finger family protein
          Length = 1179

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 112  CSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTD 219
            C    Y  EGD  +  N+ ++DG  +  E T KLTD
Sbjct: 1020 CLKLTYVEEGDNDRESNLKLLDGSVEEKEDTKKLTD 1055


>At5g36670.1 68418.m04388 PHD finger family protein
          Length = 1193

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 112  CSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTD 219
            C    Y  EGD  +  N+ ++DG  +  E T KLTD
Sbjct: 1034 CLKLTYVEEGDNDRESNLKLLDGSVEEKEDTKKLTD 1069


>At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative
           strong similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana
          Length = 345

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
 Frame = +1

Query: 73  ISKFPNESEKNGKCSSAEYKLEG--DVVKVKNVHI 171
           +S FP ES+ + K ++ E+KL G  + V VKN+++
Sbjct: 14  VSGFPKESDFDFKTTTVEFKLPGGSNSVLVKNLYL 48


>At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) similar
           to COP1-interacting protein 4 (CIP4) [Arabidopsis
           thaliana] GI:13160646; supporting cDNA
           gi|13160645|dbj|AB036832.1|;
          Length = 876

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/75 (26%), Positives = 35/75 (46%)
 Frame = +1

Query: 97  EKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISR 276
           EK+GK SS   K +  +  V+   ++D +++  E    L     K++K T   K   ++ 
Sbjct: 515 EKSGKKSSKRSKKKDSLNIVEEAQVVDSLQQKKEAEENLEKSGKKSSKKTK--KKDSLNI 572

Query: 277 DGSVQVLATDYINYA 321
               QVL+ +  N A
Sbjct: 573 VEEAQVLSVEVNNVA 587


>At4g37890.2 68417.m05359 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 711

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +2

Query: 290 KSWRLTILTTPSLTTANTMTRKSLIKC-SSGSSLETRSLKATLKLLSIISSRNTP 451
           +SW  T ++TPS     ++     ++C +SG    TR+ ++ L  LS+ SS +TP
Sbjct: 64  QSWSATAISTPS----PSLPASPKLQCDTSGDVTPTRN-RSPLSFLSVSSSSSTP 113


>At4g37890.1 68417.m05358 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 739

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +2

Query: 290 KSWRLTILTTPSLTTANTMTRKSLIKC-SSGSSLETRSLKATLKLLSIISSRNTP 451
           +SW  T ++TPS     ++     ++C +SG    TR+ ++ L  LS+ SS +TP
Sbjct: 64  QSWSATAISTPS----PSLPASPKLQCDTSGDVTPTRN-RSPLSFLSVSSSSSTP 113


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,809,080
Number of Sequences: 28952
Number of extensions: 280529
Number of successful extensions: 877
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)