Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0190
(760 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_A1Z6I8 Cluster: CG11680-PB, isoform B; n=2; Drosophila ... 124 2e-27
UniRef50_P24785 Cluster: Dosage compensation regulator; n=6; End... 124 2e-27
UniRef50_Q0IFJ1 Cluster: ATP-dependent RNA helicase; n=2; Coelom... 122 1e-26
UniRef50_Q08211 Cluster: ATP-dependent RNA helicase A; n=42; cel... 116 5e-25
UniRef50_Q4T4A4 Cluster: Chromosome undetermined SCAF9761, whole... 111 2e-23
UniRef50_Q22307 Cluster: Probable ATP-dependent RNA helicase A; ... 90 5e-17
UniRef50_Q1RQ08 Cluster: Zinc finger protein; n=1; Ciona intesti... 73 8e-12
UniRef50_UPI0001554C21 Cluster: PREDICTED: similar to 65 kD prot... 47 6e-04
UniRef50_A1KR30 Cluster: Double stranded RNA activated protein k... 46 8e-04
UniRef50_P51837 Cluster: Ribonuclease 3; n=5; Gammaproteobacteri... 46 0.001
UniRef50_Q6NGH3 Cluster: Ribonuclease 3; n=6; Corynebacterium|Re... 44 0.005
UniRef50_UPI0000588C0A Cluster: PREDICTED: similar to MGC53736 p... 43 0.007
UniRef50_UPI00004D0C59 Cluster: Interferon-induced, double-stran... 42 0.017
UniRef50_Q0P4K2 Cluster: Putative uncharacterized protein MGC147... 42 0.017
UniRef50_Q6A7R5 Cluster: Ribonuclease III; n=2; Actinomycetales|... 42 0.017
UniRef50_A3EU88 Cluster: DsRNA-specific ribonuclease; n=1; Lepto... 42 0.017
UniRef50_Q17BU1 Cluster: Putative uncharacterized protein; n=1; ... 41 0.029
UniRef50_P74368 Cluster: Ribonuclease 3; n=1; Synechocystis sp. ... 41 0.029
UniRef50_UPI0000DB79F1 Cluster: PREDICTED: similar to CG8273-PA;... 40 0.067
UniRef50_A5BPJ2 Cluster: Putative uncharacterized protein; n=1; ... 40 0.067
UniRef50_Q1Q4S0 Cluster: Similar to ribonuclease III; n=1; Candi... 40 0.088
UniRef50_Q1IX47 Cluster: Double-stranded RNA binding; n=2; Deino... 40 0.088
UniRef50_A3EQH6 Cluster: DsRNA-specific ribonuclease; n=1; Lepto... 39 0.12
UniRef50_A5V230 Cluster: Ribonuclease III; n=2; Roseiflexus|Rep:... 39 0.15
UniRef50_Q1EPG5 Cluster: Double-stranded RNA-binding (DsRBD) dom... 38 0.20
UniRef50_A7Q5S5 Cluster: Chromosome chr14 scaffold_54, whole gen... 38 0.20
UniRef50_Q4SMW1 Cluster: Chromosome 6 SCAF14544, whole genome sh... 38 0.27
UniRef50_Q8GEG0 Cluster: Putative uncharacterized protein; n=1; ... 38 0.27
UniRef50_Q0DKP4 Cluster: Os05g0150400 protein; n=4; Oryza sativa... 37 0.47
UniRef50_Q37953 Cluster: LacZ protein; n=1; Phage M13mp18|Rep: L... 37 0.47
UniRef50_P00722 Cluster: Beta-galactosidase; n=35; root|Rep: Bet... 37 0.47
UniRef50_A0WD16 Cluster: Ribonuclease III; n=1; Geobacter lovley... 37 0.62
UniRef50_A7QRI5 Cluster: Chromosome chr8 scaffold_150, whole gen... 37 0.62
UniRef50_Q7PPS2 Cluster: ENSANGP00000020540; n=1; Anopheles gamb... 37 0.62
UniRef50_Q47336 Cluster: LacZ-alpha peptide; n=2; cellular organ... 36 1.1
UniRef50_A1HN82 Cluster: Ribonuclease III; n=4; Clostridia|Rep: ... 36 1.1
UniRef50_UPI00015BD56E Cluster: UPI00015BD56E related cluster; n... 36 1.4
UniRef50_Q7SXR1 Cluster: TAR (HIV) RNA binding protein 2; n=3; C... 36 1.4
UniRef50_Q6YPW7 Cluster: Ribonuclease 3; n=3; Candidatus Phytopl... 36 1.4
UniRef50_Q9Q942 Cluster: Gp029L; n=2; Leporipoxvirus|Rep: Gp029L... 35 1.9
UniRef50_A0LGM1 Cluster: Ribonuclease III; n=1; Syntrophobacter ... 35 1.9
UniRef50_O04492 Cluster: F21M12.9 protein; n=14; Brassicaceae|Re... 35 1.9
UniRef50_A7P9Z2 Cluster: Chromosome chr14 scaffold_9, whole geno... 35 1.9
UniRef50_Q8IHA8 Cluster: AT18855p; n=3; Drosophila melanogaster|... 35 1.9
UniRef50_Q9NUL3 Cluster: Double-stranded RNA-binding protein Sta... 35 1.9
UniRef50_Q97QG6 Cluster: Ribonuclease 3; n=46; Lactobacillales|R... 35 1.9
UniRef50_Q3ZXY9 Cluster: Ribonuclease 3; n=3; Dehalococcoides|Re... 35 1.9
UniRef50_Q57E81 Cluster: Ribonuclease 3; n=19; Rhizobiales|Rep: ... 35 1.9
UniRef50_Q4SKQ4 Cluster: Chromosome undetermined SCAF14565, whol... 35 2.5
UniRef50_A7NUL2 Cluster: Chromosome chr18 scaffold_1, whole geno... 35 2.5
UniRef50_Q295I7 Cluster: GA20947-PA; n=1; Drosophila pseudoobscu... 35 2.5
UniRef50_Q15633 Cluster: TAR RNA-binding protein 2; n=19; Eutele... 35 2.5
UniRef50_Q7UGZ7 Cluster: Ribonuclease 3; n=3; Planctomycetaceae|... 35 2.5
UniRef50_Q4FLS9 Cluster: Ribonuclease 3; n=2; Candidatus Pelagib... 34 4.4
UniRef50_Q7MU11 Cluster: Ribonuclease III; n=1; Porphyromonas gi... 33 5.8
UniRef50_A7LVV6 Cluster: Putative uncharacterized protein; n=1; ... 33 5.8
UniRef50_Q0IV63 Cluster: Os11g0109900 protein; n=13; Magnoliophy... 33 5.8
UniRef50_Q4DNU7 Cluster: Putative uncharacterized protein; n=2; ... 33 5.8
UniRef50_Q8A2E8 Cluster: Ribonuclease 3; n=6; Bacteroidales|Rep:... 33 5.8
UniRef50_UPI0000D57665 Cluster: PREDICTED: similar to SON DNA-bi... 33 7.7
UniRef50_A7B5M4 Cluster: Putative uncharacterized protein; n=1; ... 33 7.7
UniRef50_A4J683 Cluster: Ribonuclease III; n=1; Desulfotomaculum... 33 7.7
UniRef50_A7RMK5 Cluster: Predicted protein; n=1; Nematostella ve... 33 7.7
UniRef50_Q8XJN8 Cluster: Ribonuclease 3; n=20; Bacteria|Rep: Rib... 33 7.7
UniRef50_Q8KAN7 Cluster: Ribonuclease 3; n=9; Chlorobiaceae|Rep:... 33 7.7
UniRef50_Q9KA05 Cluster: Ribonuclease 3; n=38; Bacilli|Rep: Ribo... 33 7.7
>UniRef50_A1Z6I8 Cluster: CG11680-PB, isoform B; n=2; Drosophila
melanogaster|Rep: CG11680-PB, isoform B - Drosophila
melanogaster (Fruit fly)
Length = 226
Score = 124 bits (299), Expect = 2e-27
Identities = 62/110 (56%), Positives = 73/110 (66%), Gaps = 1/110 (0%)
Frame = +1
Query: 88 MDIKSFLYTWCAKKGLTPLFDIRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNA 267
MDIKSFLY +CAK + P FDIR TGPK+RQRFLCEVRVE +Y+G GNST KKDA+ NA
Sbjct: 1 MDIKSFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNA 60
Query: 268 AKDFVSYLVRAGQIPQADVPEDVKAKAIXXXXXXXXXXXXGGQ-QPKQVF 414
+DFV+YLVR G++ DVP D A GG Q K+VF
Sbjct: 61 CRDFVNYLVRVGKLNTNDVPADAGASGGGPRTGLEGAGMAGGSGQQKRVF 110
>UniRef50_P24785 Cluster: Dosage compensation regulator; n=6;
Endopterygota|Rep: Dosage compensation regulator -
Drosophila melanogaster (Fruit fly)
Length = 1293
Score = 124 bits (299), Expect = 2e-27
Identities = 62/110 (56%), Positives = 73/110 (66%), Gaps = 1/110 (0%)
Frame = +1
Query: 88 MDIKSFLYTWCAKKGLTPLFDIRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNA 267
MDIKSFLY +CAK + P FDIR TGPK+RQRFLCEVRVE +Y+G GNST KKDA+ NA
Sbjct: 1 MDIKSFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNA 60
Query: 268 AKDFVSYLVRAGQIPQADVPEDVKAKAIXXXXXXXXXXXXGGQ-QPKQVF 414
+DFV+YLVR G++ DVP D A GG Q K+VF
Sbjct: 61 CRDFVNYLVRVGKLNTNDVPADAGASGGGPRTGLEGAGMAGGSGQQKRVF 110
>UniRef50_Q0IFJ1 Cluster: ATP-dependent RNA helicase; n=2;
Coelomata|Rep: ATP-dependent RNA helicase - Aedes
aegypti (Yellowfever mosquito)
Length = 1131
Score = 122 bits (293), Expect = 1e-26
Identities = 52/81 (64%), Positives = 64/81 (79%)
Frame = +1
Query: 91 DIKSFLYTWCAKKGLTPLFDIRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAA 270
DIKSF Y WC K TP F++R TGPK+RQRFLCEVRV +Y+GAGNST KKDA+ NAA
Sbjct: 2 DIKSFFYEWCQKGSFTPSFEVRPTGPKNRQRFLCEVRVPSEAYVGAGNSTNKKDAERNAA 61
Query: 271 KDFVSYLVRAGQIPQADVPED 333
+DFV+YLVR G++ +DVP +
Sbjct: 62 RDFVNYLVRTGKVASSDVPSE 82
>UniRef50_Q08211 Cluster: ATP-dependent RNA helicase A; n=42;
cellular organisms|Rep: ATP-dependent RNA helicase A -
Homo sapiens (Human)
Length = 1270
Score = 116 bits (280), Expect = 5e-25
Identities = 48/79 (60%), Positives = 64/79 (81%)
Frame = +1
Query: 91 DIKSFLYTWCAKKGLTPLFDIRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAA 270
D+K+FLY WC K+ +TP ++IRA G K+RQ+F+CEV+VEG++Y G GNST KKDAQ NAA
Sbjct: 3 DVKNFLYAWCGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNYTGMGNSTNKKDAQSNAA 62
Query: 271 KDFVSYLVRAGQIPQADVP 327
+DFV+YLVR +I +VP
Sbjct: 63 RDFVNYLVRINEIKSEEVP 81
>UniRef50_Q4T4A4 Cluster: Chromosome undetermined SCAF9761, whole
genome shotgun sequence; n=2; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF9761,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 1091
Score = 111 bits (266), Expect = 2e-23
Identities = 53/97 (54%), Positives = 67/97 (69%), Gaps = 11/97 (11%)
Frame = +1
Query: 91 DIKSFLYTWCAKKGLTPLFDIRATGPKHRQRFLCEVR-----------VEGFSYLGAGNS 237
D+K+FLY WC KK LTP +DIRA G K+RQ+F+CEVR V GF+Y+G GNS
Sbjct: 14 DVKNFLYAWCGKKKLTPNYDIRAAGNKNRQKFMCEVRSDPASPTLQVQVSGFNYIGMGNS 73
Query: 238 TTKKDAQMNAAKDFVSYLVRAGQIPQADVPEDVKAKA 348
T KKDAQ NAA+DFV++LVR G++ +VP KA
Sbjct: 74 TNKKDAQTNAARDFVNFLVRIGEVTATEVPSVTGKKA 110
>UniRef50_Q22307 Cluster: Probable ATP-dependent RNA helicase A;
n=3; Caenorhabditis|Rep: Probable ATP-dependent RNA
helicase A - Caenorhabditis elegans
Length = 1301
Score = 90.2 bits (214), Expect = 5e-17
Identities = 41/83 (49%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Frame = +1
Query: 82 LKMDIKSFLYTWCAK-KGLTPLFDIRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQ 258
+ D+K FLY W K K P +D ++ RQRF CE+R+ GF Y GNST KKDA
Sbjct: 1 MSRDVKEFLYAWLGKNKYGNPTYDTKSETRSGRQRFKCELRITGFGYTAFGNSTNKKDAA 60
Query: 259 MNAAKDFVSYLVRAGQIPQADVP 327
NAA+DF YLVR G++ Q+D+P
Sbjct: 61 TNAAQDFCQYLVREGKMQQSDIP 83
>UniRef50_Q1RQ08 Cluster: Zinc finger protein; n=1; Ciona
intestinalis|Rep: Zinc finger protein - Ciona
intestinalis (Transparent sea squirt)
Length = 947
Score = 72.9 bits (171), Expect = 8e-12
Identities = 35/94 (37%), Positives = 58/94 (61%), Gaps = 2/94 (2%)
Frame = +1
Query: 73 KYLLKMDIKSFLYTWCAKKGLTPLFDIRATGPK-HRQRFLCEVRVEGFSYLGAGNSTTKK 249
K ++ ++K++LY W +KK P ++I A G +RQ ++CE+ V G+ Y+ G++ KK
Sbjct: 236 KPIVATEVKAYLYAWLSKKKARPDYNITAHGSHPYRQTYVCEIVVHGYDYVAKGSAGNKK 295
Query: 250 DAQMNAAKDFVSYLVRAGQIPQADVP-EDVKAKA 348
D+Q AA DF YLVR + ++++P D K A
Sbjct: 296 DSQTRAAWDFCDYLVREKLMTESELPIRDAKFAA 329
>UniRef50_UPI0001554C21 Cluster: PREDICTED: similar to 65 kD protein
kinase; n=1; Ornithorhynchus anatinus|Rep: PREDICTED:
similar to 65 kD protein kinase - Ornithorhynchus
anatinus
Length = 546
Score = 46.8 bits (106), Expect = 6e-04
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +1
Query: 106 LYTWCAKKGLTPLF-DIRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAAKDFV 282
L+ +C K+GL ++ D+ TGP H +F +V +EG + A S +KK A+ AAK V
Sbjct: 14 LHEYCQKRGLKLVYRDVSKTGPDHNLQFTIQVIIEGREFPEASGS-SKKKAKDAAAKLAV 72
Query: 283 SYLVRAGQIP 312
L R Q+P
Sbjct: 73 KILERENQVP 82
>UniRef50_A1KR30 Cluster: Double stranded RNA activated protein
kinase 1; n=2; Xenopus|Rep: Double stranded RNA
activated protein kinase 1 - Xenopus laevis (African
clawed frog)
Length = 578
Score = 46.4 bits (105), Expect = 8e-04
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +1
Query: 88 MDIKSFLYTWCAKKGLTPLFD-IRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMN 264
+++K L ++C K GL+ F + ATGP H RF +V V G LG G KK A+
Sbjct: 4 LNVKGQLISFCTKNGLSYQFKKVEATGPSHDPRFTFQVFVNG-EKLGEGQDKKKKGAECM 62
Query: 265 AAKDFVSYL 291
AAK +S L
Sbjct: 63 AAKMALSTL 71
>UniRef50_P51837 Cluster: Ribonuclease 3; n=5;
Gammaproteobacteria|Rep: Ribonuclease 3 - Coxiella
burnetii
Length = 233
Score = 45.6 bits (103), Expect = 0.001
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +1
Query: 85 KMDIKSFLYTWCAKKGLT-PLFDIRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQM 261
K D KS L W + L P ++++ TG H Q F V+G + G +TT++ A+
Sbjct: 151 KKDAKSLLQEWLQARRLPLPTYEVKITGEAHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQ 210
Query: 262 NAAKDFVSYL 291
AAK F+ L
Sbjct: 211 IAAKRFLELL 220
>UniRef50_Q6NGH3 Cluster: Ribonuclease 3; n=6; Corynebacterium|Rep:
Ribonuclease 3 - Corynebacterium diphtheriae
Length = 249
Score = 43.6 bits (98), Expect = 0.005
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +1
Query: 82 LKMDIKSFLYTWCAKKGLT-PLFDIRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQ 258
L D K+ L A++ L P + TGP+H Q F EV V G + LG G T KK A+
Sbjct: 173 LHQDWKTTLQERLAERNLEMPTYTSTVTGPEHEQTFTAEVAVHG-TVLGTGVGTNKKLAE 231
Query: 259 MNAAKDFVSYL 291
AA V +L
Sbjct: 232 QAAAHKAVGFL 242
>UniRef50_UPI0000588C0A Cluster: PREDICTED: similar to MGC53736
protein; n=1; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to MGC53736 protein -
Strongylocentrotus purpuratus
Length = 306
Score = 43.2 bits (97), Expect = 0.007
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = +1
Query: 100 SFLYTWCAKKGLTPLFD-IRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAAKD 276
S L CAKKG+TP++D I G H+ +F +R +G G +KK A+ +AA+D
Sbjct: 9 SILQELCAKKGVTPVYDTIGQEGASHQPKF--TIRCTAGDVVGNGQGPSKKVAKQSAAED 66
Query: 277 FVSYLVRAGQIPQADVPED 333
+ L ++P + +D
Sbjct: 67 VLQQL--DIEVPAVETEQD 83
>UniRef50_UPI00004D0C59 Cluster: Interferon-induced, double-stranded
RNA-activated protein kinase (EC 2.7.1.-)
(Interferon-inducible RNA-dependent protein kinase) (p68
kinase) (P1/eIF-2A protein kinase).; n=1; Xenopus
tropicalis|Rep: Interferon-induced, double-stranded
RNA-activated protein kinase (EC 2.7.1.-)
(Interferon-inducible RNA-dependent protein kinase) (p68
kinase) (P1/eIF-2A protein kinase). - Xenopus tropicalis
Length = 467
Score = 41.9 bits (94), Expect = 0.017
Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 88 MDIKSFLYTWCAKKGLTPLF-DIRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMN 264
++ K L T+C K GL F ++ ATGP H RF +V V LG G KK A+
Sbjct: 5 LNAKGQLITFCIKNGLAYHFNEVEATGPSHDPRFTSQVFVNQ-EKLGEGQDKKKKGAENI 63
Query: 265 AAK 273
AAK
Sbjct: 64 AAK 66
>UniRef50_Q0P4K2 Cluster: Putative uncharacterized protein
MGC147195; n=3; Euteleostomi|Rep: Putative
uncharacterized protein MGC147195 - Xenopus tropicalis
(Western clawed frog) (Silurana tropicalis)
Length = 552
Score = 41.9 bits (94), Expect = 0.017
Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 88 MDIKSFLYTWCAKKGLTPLF-DIRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMN 264
++ K L T+C K GL F ++ ATGP H RF +V V LG G KK A+
Sbjct: 4 LNAKGQLITFCIKNGLAYHFNEVEATGPSHDPRFTSQVFVNQ-EKLGEGQDKKKKGAENI 62
Query: 265 AAK 273
AAK
Sbjct: 63 AAK 65
>UniRef50_Q6A7R5 Cluster: Ribonuclease III; n=2;
Actinomycetales|Rep: Ribonuclease III -
Propionibacterium acnes
Length = 366
Score = 41.9 bits (94), Expect = 0.017
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = +1
Query: 91 DIKSFLYTWCAKKGL-TPLFDIRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNA 267
D K+ L +CA+ G P ++I +GP H +R+ V+G + A KK+A+ A
Sbjct: 292 DWKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGRLH-AAYTGHNKKEAEQGA 350
Query: 268 AKDFVSYLV 294
A+ VS L+
Sbjct: 351 ARRAVSALI 359
>UniRef50_A3EU88 Cluster: DsRNA-specific ribonuclease; n=1;
Leptospirillum sp. Group II UBA|Rep: DsRNA-specific
ribonuclease - Leptospirillum sp. Group II UBA
Length = 247
Score = 41.9 bits (94), Expect = 0.017
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Frame = +1
Query: 91 DIKSFLYTWCAKKGLT-PLFDIR-ATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMN 264
D K+ L +C ++ T P++ + GP H++ F V + G Y G G+ +KK+A+
Sbjct: 164 DYKTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGKIY-GEGSGKSKKEAEQK 222
Query: 265 AAKDFVSYLVRAGQ 306
AAKD +S L R +
Sbjct: 223 AAKDALSRLARTSR 236
>UniRef50_Q17BU1 Cluster: Putative uncharacterized protein; n=1; Aedes
aegypti|Rep: Putative uncharacterized protein - Aedes
aegypti (Yellowfever mosquito)
Length = 919
Score = 41.1 bits (92), Expect = 0.029
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = +1
Query: 100 SFLYTWCAK-KGLTPLFD-IRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAAK 273
S L +C+K K + P +D + +GP H + F+ +V V G Y A + TKK+A+ AAK
Sbjct: 849 SILGEYCSKRKWMPPRYDLVHESGPGHAKNFVFKVIVNGLEYQPAIANNTKKEAKATAAK 908
>UniRef50_P74368 Cluster: Ribonuclease 3; n=1; Synechocystis sp. PCC
6803|Rep: Ribonuclease 3 - Synechocystis sp. (strain PCC
6803)
Length = 231
Score = 41.1 bits (92), Expect = 0.029
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +1
Query: 70 PKYLLKMDIKSFLYTWC-AKKGLTPLFD-IRATGPKHRQRFLCEVRVEGFSYLGAGNSTT 243
PK + MD+KS L W AK P ++ I +GP H Q F V+V G + G G+ +
Sbjct: 153 PKLVPTMDVKSMLQQWALAKTKQLPEYELINTSGPPHAQEFTFTVKVAGKIH-GQGSGPS 211
Query: 244 KKDAQMNAAKDFVSYL 291
K+ A AA + + L
Sbjct: 212 KQIATKQAALEALKSL 227
>UniRef50_UPI0000DB79F1 Cluster: PREDICTED: similar to CG8273-PA;
n=1; Apis mellifera|Rep: PREDICTED: similar to CG8273-PA
- Apis mellifera
Length = 485
Score = 39.9 bits (89), Expect = 0.067
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = +1
Query: 100 SFLYTWCAKKGL-TPLFDIR-ATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAAK 273
S L +C+K+ L P++++ GP HR+ FL +V+V G Y + S KK A+ AA+
Sbjct: 409 SLLGEYCSKRKLGAPVYELCFECGPDHRKNFLFKVKVNGIEYKPSVASPNKKQAKAEAAQ 468
>UniRef50_A5BPJ2 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 292
Score = 39.9 bits (89), Expect = 0.067
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +1
Query: 97 KSFLYTWCAKKGLT-PLFDIRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAAK 273
K+ L K+G P++ +G H FL V +EG +++G + TKK A+MNAAK
Sbjct: 224 KNLLQEMARKEGYQLPVYSTEKSGVSHMPTFLSTVEIEGETFVGQ-KAKTKKLAEMNAAK 282
Query: 274 DFVSYL 291
++L
Sbjct: 283 AAYTHL 288
Score = 38.3 bits (85), Expect = 0.20
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = +1
Query: 64 YRPKYLLKMDIKSFLYTWCAKKGLTPL-FDIRATGPKHRQRFLCEVRVEGFSYLGAGNST 240
Y Y +M+ K+ L C +K P + R GP H F V V G S+ +
Sbjct: 2 YTEAYEREMN-KTRLQELCHRKRWNPPEYSTRKDGPPHNPTFXATVSVGGLSFSTDHPAR 60
Query: 241 TKKDAQMNAAKDFVSYLVRAGQIPQAD 321
+ K+AQ NAA + YL P AD
Sbjct: 61 SSKEAQSNAAGLAIQYLTDPKPPPLAD 87
>UniRef50_Q1Q4S0 Cluster: Similar to ribonuclease III; n=1;
Candidatus Kuenenia stuttgartiensis|Rep: Similar to
ribonuclease III - Candidatus Kuenenia stuttgartiensis
Length = 236
Score = 39.5 bits (88), Expect = 0.088
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Frame = +1
Query: 85 KMDIKSFLYTWCAKK-GLTPLFDI-RATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQ 258
K + KS L + K+ G+TP + + + GP H + F V ++G Y G G +KK+A+
Sbjct: 162 KKNYKSILQQYSQKEYGITPTYRLLQQIGPDHGKSFEIVVSIKGSEY-GRGWGKSKKEAE 220
Query: 259 MNAAKDFVSYL 291
+AAK+ + L
Sbjct: 221 QSAAKEALKIL 231
>UniRef50_Q1IX47 Cluster: Double-stranded RNA binding; n=2;
Deinococcus|Rep: Double-stranded RNA binding -
Deinococcus geothermalis (strain DSM 11300)
Length = 176
Score = 39.5 bits (88), Expect = 0.088
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +1
Query: 67 RPKYLLKMDIKSFLYTWCAKKGL-TPLFDIRATGPKHRQRFLCEVRVEGFSYLGAGNSTT 243
R +Y M+ K L GL P FD A GP H + F V G LG G +
Sbjct: 39 RARYAEAMNPKGDLIARLMALGLGAPTFDATAEGPPHERVFHVMVSASG-RVLGQGEGRS 97
Query: 244 KKDAQMNAAKDFVSYLVRAGQIP 312
K+DA+ AA+ ++ L G+ P
Sbjct: 98 KRDAERAAAEAALARLDGRGEAP 120
>UniRef50_A3EQH6 Cluster: DsRNA-specific ribonuclease; n=1;
Leptospirillum sp. Group II UBA|Rep: DsRNA-specific
ribonuclease - Leptospirillum sp. Group II UBA
Length = 377
Score = 39.1 bits (87), Expect = 0.12
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +1
Query: 88 MDIKSFLYTWCAKKGLT-PLFDI-RATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQM 261
++ K L WC K P++ + GP H++RF V ++G LG TTK+ A +
Sbjct: 201 LNYKLLLQKWCQSKAEELPVYQVLEEIGPAHQRRFRLGVFLKG-KQLGEAEGTTKRGASV 259
Query: 262 NAAKD 276
+AAK+
Sbjct: 260 HAAKN 264
>UniRef50_A5V230 Cluster: Ribonuclease III; n=2; Roseiflexus|Rep:
Ribonuclease III - Roseiflexus sp. RS-1
Length = 237
Score = 38.7 bits (86), Expect = 0.15
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Frame = +1
Query: 70 PKYLLKMDIKSFLYTWC-AKKGLTPLF-DIRATGPKHRQRFLCEVRVEGFSYLGAGNSTT 243
P L +D KS L A++ +TP + +I +GP+HR F EVR G LG G +
Sbjct: 156 PDRTLPVDYKSRLQARIQAERRVTPRYHEIDRSGPEHRPEFTVEVRA-GEERLGTGKGPS 214
Query: 244 KKDAQMNAAK 273
K+ A+ AA+
Sbjct: 215 KQAAEQAAAR 224
>UniRef50_Q1EPG5 Cluster: Double-stranded RNA-binding (DsRBD)
domain-containing protein; n=3; Magnoliophyta|Rep:
Double-stranded RNA-binding (DsRBD) domain-containing
protein - Musa acuminata (Banana)
Length = 610
Score = 38.3 bits (85), Expect = 0.20
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Frame = +1
Query: 97 KSFLYTWCAKKGLT-PLFDIRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAA- 270
K+ L + GL P++ +GP H F C V + G S+ G + TKK AQ NAA
Sbjct: 89 KNLLQETAHRAGLKLPVYTTVRSGPGHTPIFTCTVELAGMSFTG-DPAKTKKQAQKNAAM 147
Query: 271 ------KDFVSYLV 294
K F SYLV
Sbjct: 148 AAWSALKHFKSYLV 161
>UniRef50_A7Q5S5 Cluster: Chromosome chr14 scaffold_54, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr14 scaffold_54, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 543
Score = 38.3 bits (85), Expect = 0.20
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +1
Query: 97 KSFLYTWCAKKGLT-PLFDIRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAAK 273
K+ L + GL P++ +GP H F C V + G S+ G + TKK AQ NAA
Sbjct: 89 KNLLQETAHRAGLNLPVYTTIRSGPGHVPVFSCTVEIAGMSFTGEA-AKTKKQAQKNAAM 147
Query: 274 DFVSYLVRAGQ 306
S L + Q
Sbjct: 148 TAWSALRKLSQ 158
>UniRef50_Q4SMW1 Cluster: Chromosome 6 SCAF14544, whole genome
shotgun sequence; n=2; Tetraodon nigroviridis|Rep:
Chromosome 6 SCAF14544, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 687
Score = 37.9 bits (84), Expect = 0.27
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +1
Query: 100 SFLYTWCAKKGLTPLFDI-RATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAAKD 276
S +Y K+ L F++ + +GP H + FL V V FS G GNS KK ++ AA
Sbjct: 272 SLVYEIALKRNLCVNFEVLKESGPPHMKSFLTRVTVGEFSAEGEGNS--KKLSKKRAAIS 329
Query: 277 FVSYLVRAGQIPQADVPE 330
+ L + IP + P+
Sbjct: 330 ILQDLKKLPIIPAVEKPK 347
>UniRef50_Q8GEG0 Cluster: Putative uncharacterized protein; n=1;
Erwinia amylovora|Rep: Putative uncharacterized protein
- Erwinia amylovora (Fire blight bacteria)
Length = 123
Score = 37.9 bits (84), Expect = 0.27
Identities = 18/31 (58%), Positives = 19/31 (61%)
Frame = +2
Query: 668 YPIRPIXSRITIHWAVXLQRRDWXNPGVTQL 760
YP+ S AV LQRRDW NPGVTQL
Sbjct: 55 YPLVKALSESYYGLAVVLQRRDWENPGVTQL 85
>UniRef50_Q0DKP4 Cluster: Os05g0150400 protein; n=4; Oryza
sativa|Rep: Os05g0150400 protein - Oryza sativa subsp.
japonica (Rice)
Length = 593
Score = 37.1 bits (82), Expect = 0.47
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Frame = +1
Query: 97 KSFLYTWCAKKGLT-PLFDIRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAAK 273
K+ L + GL P++ +GP H F C V + G ++ G TKK AQ NAA
Sbjct: 89 KNLLQETAHRAGLKLPVYTTIRSGPGHTPVFTCTVELAGMTFTG-NPGKTKKQAQKNAAM 147
Query: 274 ---DFVSYLVRAGQIPQADVPED 333
+ L R G+ + P D
Sbjct: 148 AAWSELKQLPRVGEPSSSSCPPD 170
>UniRef50_Q37953 Cluster: LacZ protein; n=1; Phage M13mp18|Rep: LacZ
protein - Phage M13mp18
Length = 102
Score = 37.1 bits (82), Expect = 0.47
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +2
Query: 671 PIRPIXSRITIHWAVXLQRRDWXNPGVTQL 760
P+ ++ AV LQRRDW NPGVTQL
Sbjct: 14 PLESTCRHASLALAVVLQRRDWENPGVTQL 43
>UniRef50_P00722 Cluster: Beta-galactosidase; n=35; root|Rep:
Beta-galactosidase - Escherichia coli (strain K12)
Length = 1024
Score = 37.1 bits (82), Expect = 0.47
Identities = 17/22 (77%), Positives = 17/22 (77%)
Frame = +2
Query: 695 ITIHWAVXLQRRDWXNPGVTQL 760
IT AV LQRRDW NPGVTQL
Sbjct: 4 ITDSLAVVLQRRDWENPGVTQL 25
>UniRef50_A0WD16 Cluster: Ribonuclease III; n=1; Geobacter lovleyi
SZ|Rep: Ribonuclease III - Geobacter lovleyi SZ
Length = 228
Score = 36.7 bits (81), Expect = 0.62
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +1
Query: 121 AKKGLTPLFD-IRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAAKDFVSYL 291
A+K P+++ + GP H + F EV V+G LG G +KK AQ +AA+ ++ L
Sbjct: 170 ARKQAAPVYNLVDQQGPDHDRLFCIEVSVDGMP-LGQGQGRSKKAAQQSAAESALARL 226
>UniRef50_A7QRI5 Cluster: Chromosome chr8 scaffold_150, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr8 scaffold_150, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 174
Score = 36.7 bits (81), Expect = 0.62
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +1
Query: 97 KSFLYTWCAKKGLTPL-FDIRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAAK 273
K+ L C +K P + R GP H F+ V V G S+ + + K+AQ NAA
Sbjct: 3 KTRLQELCHRKRWNPPEYSTRKDGPPHNPTFIATVSVGGLSFSTDHPARSSKEAQSNAAG 62
Query: 274 DFVSYLVRAGQIPQADV 324
+ YL P A +
Sbjct: 63 LAIQYLTDPKPPPLAAI 79
>UniRef50_Q7PPS2 Cluster: ENSANGP00000020540; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000020540 - Anopheles gambiae
str. PEST
Length = 794
Score = 36.7 bits (81), Expect = 0.62
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +1
Query: 100 SFLYTWCAK-KGLTPLFD-IRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAAK 273
S L + K K P+++ + +GP H + F+ +V V G Y A + TKK+A+ AAK
Sbjct: 724 SILCEYATKHKWNAPMYELVHESGPGHAKNFIFKVLVNGLEYQPAIANNTKKEAKATAAK 783
>UniRef50_Q47336 Cluster: LacZ-alpha peptide; n=2; cellular
organisms|Rep: LacZ-alpha peptide - Escherichia coli
Length = 90
Score = 35.9 bits (79), Expect = 1.1
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = +2
Query: 710 AVXLQRRDWXNPGVTQL 760
AV LQRRDW NPGVTQL
Sbjct: 23 AVVLQRRDWENPGVTQL 39
>UniRef50_A1HN82 Cluster: Ribonuclease III; n=4; Clostridia|Rep:
Ribonuclease III - Thermosinus carboxydivorans Nor1
Length = 243
Score = 35.9 bits (79), Expect = 1.1
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +1
Query: 163 GPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAAKDFVSYLVRAGQI 309
GP H + F V V +LGAG+ KK+A+ NAAK+ + L + +
Sbjct: 195 GPDHNKTFEVSVLVN-HQHLGAGSGKNKKEAEQNAAKEALQKLKKLNSL 242
>UniRef50_UPI00015BD56E Cluster: UPI00015BD56E related cluster; n=1;
unknown|Rep: UPI00015BD56E UniRef100 entry - unknown
Length = 232
Score = 35.5 bits (78), Expect = 1.4
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +1
Query: 82 LKMDIKSFLYTWCAKKGLT-PLFD-IRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDA 255
LK D K+ L KK P+++ I GP+HR+ F E + G GNS KK A
Sbjct: 155 LKQDYKTALQEITQKKWKERPIYNVISVEGPEHRKTFTVECLFKDLRTTGKGNS--KKYA 212
Query: 256 QMNAAKDFVSYL 291
+ AAK+ + +
Sbjct: 213 EQEAAKNMLQII 224
>UniRef50_Q7SXR1 Cluster: TAR (HIV) RNA binding protein 2; n=3;
Clupeocephala|Rep: TAR (HIV) RNA binding protein 2 -
Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 346
Score = 35.5 bits (78), Expect = 1.4
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +1
Query: 160 TGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAAKDFVS 285
+GP HR+ F RVE F +G+G T+KK A+ NAA +S
Sbjct: 164 SGPAHRKEFTMTCRVERFVEIGSG--TSKKLAKRNAAAKMLS 203
>UniRef50_Q6YPW7 Cluster: Ribonuclease 3; n=3; Candidatus
Phytoplasma|Rep: Ribonuclease 3 - Onion yellows
phytoplasma
Length = 238
Score = 35.5 bits (78), Expect = 1.4
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = +1
Query: 151 IRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAAKDFVSYLVR 297
++ GP H + F+ EV +E + LG G +TKK A+ AA+ +S + +
Sbjct: 175 VQEQGPAHSKNFVAEVYLEK-NLLGTGEGSTKKAAEQKAAQQALSKVAK 222
>UniRef50_Q9Q942 Cluster: Gp029L; n=2; Leporipoxvirus|Rep: Gp029L -
Rabbit fibroma virus
Length = 116
Score = 35.1 bits (77), Expect = 1.9
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +1
Query: 148 DIRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAAKDFVSYLVR 297
++ TG H F V V G+S+ A S KK+A+ NAAK+ + +++
Sbjct: 62 NVTRTGQSHNPTFTAVVTVSGYSFKSATGSN-KKEARKNAAKEAMDIILK 110
>UniRef50_A0LGM1 Cluster: Ribonuclease III; n=1; Syntrophobacter
fumaroxidans MPOB|Rep: Ribonuclease III -
Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB)
Length = 242
Score = 35.1 bits (77), Expect = 1.9
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 121 AKKGLTPLFDI-RATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAAK 273
A+ LTP++ + R GP H + F V +EG L G+ +KKDAQ AA+
Sbjct: 178 ARYKLTPVYVLDREEGPDHDKTFHMNVVLEG-QVLAGGSGKSKKDAQQAAAE 228
>UniRef50_O04492 Cluster: F21M12.9 protein; n=14; Brassicaceae|Rep:
F21M12.9 protein - Arabidopsis thaliana (Mouse-ear
cress)
Length = 419
Score = 35.1 bits (77), Expect = 1.9
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +1
Query: 97 KSFLYTWCAKKGL-TPLFDIRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAAK 273
KS L + K L TP+++I GP H+ F V ++G Y +K A+ +AA+
Sbjct: 17 KSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAE 76
Query: 274 DFVSYLVRAGQIPQ 315
+ L ++ ++ Q
Sbjct: 77 VALRELAKSSELSQ 90
>UniRef50_A7P9Z2 Cluster: Chromosome chr14 scaffold_9, whole genome
shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
chr14 scaffold_9, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 158
Score = 35.1 bits (77), Expect = 1.9
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 97 KSFLYTWCAKKGLT-PLFDIRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAA 270
K+ L + GL P++ +GP H F C V + G ++ G ++ TKK A+ NAA
Sbjct: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPVFTCTVELAGMNFTGE-SAKTKKQAEKNAA 146
>UniRef50_Q8IHA8 Cluster: AT18855p; n=3; Drosophila
melanogaster|Rep: AT18855p - Drosophila melanogaster
(Fruit fly)
Length = 886
Score = 35.1 bits (77), Expect = 1.9
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 127 KGLTPLFDIRAT-GPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAA 270
K + P + +R GP H + FL V + G ++ S KK+A++NAA
Sbjct: 825 KWMPPQYKLRQDIGPAHNRSFLFSVEINGQTFTPDRGSNNKKEAKLNAA 873
>UniRef50_Q9NUL3 Cluster: Double-stranded RNA-binding protein
Staufen homolog 2; n=59; Euteleostomi|Rep:
Double-stranded RNA-binding protein Staufen homolog 2 -
Homo sapiens (Human)
Length = 570
Score = 35.1 bits (77), Expect = 1.9
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +1
Query: 100 SFLYTWCAKKGLTPLFD-IRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAAKD 276
S ++ K+ + F+ I+ +GP H + F+ V V FS G GNS KK ++ AA
Sbjct: 210 SLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNS--KKLSKKRAATT 267
Query: 277 FVSYLVRAGQIPQADVPE 330
+ L + +P + P+
Sbjct: 268 VLQELKKLPPLPVVEKPK 285
>UniRef50_Q97QG6 Cluster: Ribonuclease 3; n=46; Lactobacillales|Rep:
Ribonuclease 3 - Streptococcus pneumoniae
Length = 232
Score = 35.1 bits (77), Expect = 1.9
Identities = 21/44 (47%), Positives = 26/44 (59%)
Frame = +1
Query: 151 IRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAAKDFV 282
I TGP H + F EV VEG S +G G +KK A+ AAK+ V
Sbjct: 182 ISETGPAHDKVFDVEVLVEGKS-IGQGQGRSKKLAEQEAAKNAV 224
>UniRef50_Q3ZXY9 Cluster: Ribonuclease 3; n=3; Dehalococcoides|Rep:
Ribonuclease 3 - Dehalococcoides sp. (strain CBDB1)
Length = 237
Score = 35.1 bits (77), Expect = 1.9
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +1
Query: 121 AKKGLTPLFDI-RATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAAK 273
A+ LTP + I +GP+H + F+ EV E + G+ +KK+A+ NAAK
Sbjct: 171 AQLQLTPRYRITNFSGPEHNRLFIAEVYAEDRVF-AEGSGRSKKEAETNAAK 221
>UniRef50_Q57E81 Cluster: Ribonuclease 3; n=19; Rhizobiales|Rep:
Ribonuclease 3 - Brucella abortus
Length = 245
Score = 35.1 bits (77), Expect = 1.9
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +1
Query: 85 KMDIKSFLYTWCAKKG-LTPLFDIRA-TGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQ 258
+ D K+ L W ++G + P++ I + +GP H FL EV V+GF+ G +K+ A+
Sbjct: 167 RRDAKTELQEWAHQQGNVHPVYAILSRSGPDHDPLFLVEVTVKGFA-PEKGEGRSKRIAE 225
Query: 259 MNAAK 273
+AA+
Sbjct: 226 QSAAE 230
>UniRef50_Q4SKQ4 Cluster: Chromosome undetermined SCAF14565, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF14565,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 812
Score = 34.7 bits (76), Expect = 2.5
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = +1
Query: 151 IRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAAKDFVSYLVRAGQIPQA 318
+ TGP H F V V G ++ G G TKK A+M AA+ + ++ PQA
Sbjct: 120 VSQTGPVHAPVFSIAVEVNGLTFEGTG--PTKKKAKMKAAELALKSFIQFPNAPQA 173
>UniRef50_A7NUL2 Cluster: Chromosome chr18 scaffold_1, whole genome
shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
chr18 scaffold_1, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 394
Score = 34.7 bits (76), Expect = 2.5
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +1
Query: 97 KSFLYTWCAKKGL-TPLFDIRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAAK 273
KS L + K GL TPL+D GP H F V V Y + +K A+ +AA+
Sbjct: 11 KSRLQEYAQKVGLPTPLYDTIKEGPPHVPSFKSTVIVNDVRYDSLPGFSNRKAAEQSAAE 70
Query: 274 DFVSYLVRAGQIPQ 315
+ L ++G + +
Sbjct: 71 VALVELAKSGNMKE 84
>UniRef50_Q295I7 Cluster: GA20947-PA; n=1; Drosophila
pseudoobscura|Rep: GA20947-PA - Drosophila pseudoobscura
(Fruit fly)
Length = 851
Score = 34.7 bits (76), Expect = 2.5
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 160 TGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAAK 273
+GP H + FL V + G SY KK+A++NAAK
Sbjct: 802 SGPSHIRSFLFSVEINGQSYTPDRPCNNKKEAKLNAAK 839
>UniRef50_Q15633 Cluster: TAR RNA-binding protein 2; n=19;
Euteleostomi|Rep: TAR RNA-binding protein 2 - Homo
sapiens (Human)
Length = 366
Score = 34.7 bits (76), Expect = 2.5
Identities = 21/51 (41%), Positives = 29/51 (56%)
Frame = +1
Query: 160 TGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAAKDFVSYLVRAGQIP 312
+GP HR+ F RVE F +G+G T+KK A+ NAA L+R +P
Sbjct: 184 SGPAHRKEFTMTCRVERFIEIGSG--TSKKLAKRNAA---AKMLLRVHTVP 229
>UniRef50_Q7UGZ7 Cluster: Ribonuclease 3; n=3;
Planctomycetaceae|Rep: Ribonuclease 3 - Rhodopirellula
baltica
Length = 266
Score = 34.7 bits (76), Expect = 2.5
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Frame = +1
Query: 97 KSFLYTWCAKK-GLTPLFD-IRATGPKHRQRFLCEVRVEGFSYLGA-GNSTTKKDAQMNA 267
KS L + ++ TP++ IR TGP HR+ FL V+ + A GN+ KKDA+ A
Sbjct: 187 KSVLQQFAQRELSATPVYKLIRETGPDHRKMFLMGAMVDDRRFAPAWGNN--KKDAEQRA 244
Query: 268 AKDFVSYLVRA 300
A + ++ L A
Sbjct: 245 AANALAELHNA 255
>UniRef50_Q4FLS9 Cluster: Ribonuclease 3; n=2; Candidatus
Pelagibacter ubique|Rep: Ribonuclease 3 - Pelagibacter
ubique
Length = 222
Score = 33.9 bits (74), Expect = 4.4
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +1
Query: 79 LLKMDIKSFLYTWCAKK-GLTPLFD-IRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKD 252
+ ++D K+ L + K + P++ I TGP+H+ F V+++ + A T+KKD
Sbjct: 148 ITQIDAKTKLQEYSLKIFKVLPIYKLISNTGPRHKPLFKVAVKLKNTKFFTA-EGTSKKD 206
Query: 253 AQMNAA 270
A+ NAA
Sbjct: 207 AEQNAA 212
>UniRef50_Q7MU11 Cluster: Ribonuclease III; n=1; Porphyromonas
gingivalis|Rep: Ribonuclease III - Porphyromonas
gingivalis (Bacteroides gingivalis)
Length = 237
Score = 33.5 bits (73), Expect = 5.8
Identities = 23/68 (33%), Positives = 31/68 (45%)
Frame = +1
Query: 97 KSFLYTWCAKKGLTPLFDIRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAAKD 276
KS L W K L F + + + F V V+G +G+G KK+A NAA D
Sbjct: 155 KSLLLEWAQKHHLNLEFRLISEPKRAHGHFNYAVFVDGHR-IGSGIGMNKKEAHQNAAHD 213
Query: 277 FVSYLVRA 300
+ L RA
Sbjct: 214 ALEKLKRA 221
>UniRef50_A7LVV6 Cluster: Putative uncharacterized protein; n=1;
Bacteroides ovatus ATCC 8483|Rep: Putative
uncharacterized protein - Bacteroides ovatus ATCC 8483
Length = 352
Score = 33.5 bits (73), Expect = 5.8
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +1
Query: 85 KMDIKSFLYTWCAKKGLTPLFDIRATGPKHRQR--FLCEVRVEGFSYLGAGNSTTKKDAQ 258
+++ KS L W K + F++ H F EVR+EG G G +KK++Q
Sbjct: 184 EVNFKSKLIEWSQKNKMEVSFELIEQFLDHDSNPVFQTEVRIEGLP-AGTGTGYSKKESQ 242
Query: 259 MNAAK 273
NAA+
Sbjct: 243 QNAAQ 247
>UniRef50_Q0IV63 Cluster: Os11g0109900 protein; n=13;
Magnoliophyta|Rep: Os11g0109900 protein - Oryza sativa
subsp. japonica (Rice)
Length = 473
Score = 33.5 bits (73), Expect = 5.8
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +1
Query: 184 FLCEVRVEGFSYLGAGNSTTKKDAQMNAAK 273
F+C V + G Y+GA + TKKDA++ AA+
Sbjct: 149 FICTVEIGGIQYIGAA-ARTKKDAEIKAAR 177
>UniRef50_Q4DNU7 Cluster: Putative uncharacterized protein; n=2;
Trypanosoma|Rep: Putative uncharacterized protein -
Trypanosoma cruzi
Length = 2180
Score = 33.5 bits (73), Expect = 5.8
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +1
Query: 82 LKMDIKSFLYTWCAKKGLT-PLF-DIRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDA 255
+ +D K FL +C + P+F R GP R+ L + V G ++ A KDA
Sbjct: 1014 IDVDAKQFLQRYCTAANVDYPVFWRSRTVGPVSRRVCLTTIEVPGHEHVTASGVAVNKDA 1073
Query: 256 QMNAAKDFVSYLVRAGQIPQADVPEDVKAKAI 351
A L+R + + ++VK+ +
Sbjct: 1074 SQRRAAMHALALLRRIEPDYYETEKNVKSDTV 1105
>UniRef50_Q8A2E8 Cluster: Ribonuclease 3; n=6; Bacteroidales|Rep:
Ribonuclease 3 - Bacteroides thetaiotaomicron
Length = 311
Score = 33.5 bits (73), Expect = 5.8
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +1
Query: 85 KMDIKSFLYTWCAKKGLTPLFDIRATGPKHRQR--FLCEVRVEGFSYLGAGNSTTKKDAQ 258
+++ KS L W K + F++ H F EVR+EG G G +KK++Q
Sbjct: 171 EVNFKSKLIEWSQKNKMEVSFELIEQFLDHDSNPVFQTEVRIEGLP-AGTGTGYSKKESQ 229
Query: 259 MNAAK 273
NAA+
Sbjct: 230 QNAAQ 234
>UniRef50_UPI0000D57665 Cluster: PREDICTED: similar to SON
DNA-binding protein isoform A; n=1; Tribolium
castaneum|Rep: PREDICTED: similar to SON DNA-binding
protein isoform A - Tribolium castaneum
Length = 626
Score = 33.1 bits (72), Expect = 7.7
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +1
Query: 100 SFLYTWCAKKGL-TPLFDIR-ATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAAK 273
S L + +KK L P +D+ GP H++ FL +V + G Y S KK+A+ AA
Sbjct: 557 SLLGEYASKKKLGAPQYDLCFECGPDHKKNFLFKVTLNGVEYKPNVASPNKKEAKAAAAS 616
Query: 274 DFVSYL 291
+ +L
Sbjct: 617 VCLQHL 622
>UniRef50_A7B5M4 Cluster: Putative uncharacterized protein; n=1;
Ruminococcus gnavus ATCC 29149|Rep: Putative
uncharacterized protein - Ruminococcus gnavus ATCC 29149
Length = 252
Score = 33.1 bits (72), Expect = 7.7
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 151 IRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAA 270
I+ GP H + F EV++ G + G G+ TKK A+ AA
Sbjct: 203 IKEEGPDHNKSFTVEVKI-GETVYGTGSGRTKKAAEQEAA 241
>UniRef50_A4J683 Cluster: Ribonuclease III; n=1; Desulfotomaculum
reducens MI-1|Rep: Ribonuclease III - Desulfotomaculum
reducens MI-1
Length = 246
Score = 33.1 bits (72), Expect = 7.7
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +1
Query: 160 TGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAAKDFVSYLVRAGQ 306
+GP H + F V +G +G G+ +KK+A+ AAKD +L G+
Sbjct: 189 SGPDHDKTFTAGVIYKG-KVIGKGSGHSKKEAEQQAAKDAFQHLEGMGK 236
>UniRef50_A7RMK5 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 880
Score = 33.1 bits (72), Expect = 7.7
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +1
Query: 97 KSFLYTWCAK-KGLTPLFDIRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAAK 273
K+ L +C K K P++D + + +F+C++ V+GF++ G TKK ++ +AA+
Sbjct: 811 KNQLQEYCDKNKKGAPIYDSKKVELQVDGKFVCDLLVDGFTFRAKG-CQTKKGSEQSAAR 869
>UniRef50_Q8XJN8 Cluster: Ribonuclease 3; n=20; Bacteria|Rep:
Ribonuclease 3 - Clostridium perfringens
Length = 237
Score = 33.1 bits (72), Expect = 7.7
Identities = 17/53 (32%), Positives = 31/53 (58%)
Frame = +1
Query: 151 IRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAAKDFVSYLVRAGQI 309
++ GP HR++F ++ + +G G +KK+++ NAAK + L R G+I
Sbjct: 182 VKHEGPPHRRKFFTDLLINN-EIMGQGVGFSKKESEQNAAK---AALQRLGEI 230
>UniRef50_Q8KAN7 Cluster: Ribonuclease 3; n=9; Chlorobiaceae|Rep:
Ribonuclease 3 - Chlorobium tepidum
Length = 272
Score = 33.1 bits (72), Expect = 7.7
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +1
Query: 139 PLFD-IRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAAKDFVSYLVRAGQIPQ 315
PL+ I G +H + F+ EV G LG G + KKDA+ AAK+ + L +G +
Sbjct: 206 PLYTVITEEGAEHEKTFVVEVSCNG-QPLGRGTAPRKKDAEQLAAKEAMKRL-ESGDLGN 263
Query: 316 ADVP 327
+ P
Sbjct: 264 LNEP 267
>UniRef50_Q9KA05 Cluster: Ribonuclease 3; n=38; Bacilli|Rep:
Ribonuclease 3 - Bacillus halodurans
Length = 263
Score = 33.1 bits (72), Expect = 7.7
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = +1
Query: 88 MDIKSFLYTWCAKKGLTPL-FDI-RATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQM 261
MD KS L + + L + ++I + GP H + F+ EV + + LG G +KK+A+
Sbjct: 189 MDFKSQLQEFIQRDNLGHIHYEIVQERGPAHNREFVSEVVLNNET-LGVGTGRSKKEAEQ 247
Query: 262 NAAK 273
+AA+
Sbjct: 248 HAAQ 251
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 620,428,516
Number of Sequences: 1657284
Number of extensions: 10265672
Number of successful extensions: 18173
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 17780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18167
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62969581935
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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