Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0190
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50071-4|CAA90409.2| 1301|Caenorhabditis elegans Hypothetical pr...    90   1e-18
AL132863-10|CAN99717.1|  181|Caenorhabditis elegans Hypothetical...    28   6.3  

>Z50071-4|CAA90409.2| 1301|Caenorhabditis elegans Hypothetical
           protein T07D4.3 protein.
          Length = 1301

 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 41/83 (49%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
 Frame = +1

Query: 82  LKMDIKSFLYTWCAK-KGLTPLFDIRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQ 258
           +  D+K FLY W  K K   P +D ++     RQRF CE+R+ GF Y   GNST KKDA 
Sbjct: 1   MSRDVKEFLYAWLGKNKYGNPTYDTKSETRSGRQRFKCELRITGFGYTAFGNSTNKKDAA 60

Query: 259 MNAAKDFVSYLVRAGQIPQADVP 327
            NAA+DF  YLVR G++ Q+D+P
Sbjct: 61  TNAAQDFCQYLVREGKMQQSDIP 83


>AL132863-10|CAN99717.1|  181|Caenorhabditis elegans Hypothetical
           protein Y37H2A.14 protein.
          Length = 181

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 199 RVEGFSYLGAGNSTTKKDAQMNAAKDFVSYLVRAGQIPQAD 321
           +VE      A N+  K+D+Q    K+ +S+ + + +IP AD
Sbjct: 36  KVEKVQAKRANNNRKKRDSQRTVEKEHISHGIVSTEIPAAD 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,399,161
Number of Sequences: 27780
Number of extensions: 252073
Number of successful extensions: 408
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)