Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0190
         (760 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26932.1 68416.m03370 double-stranded RNA-binding domain (DsR...    35   0.051
At1g09700.1 68414.m01089 double-stranded RNA-binding domain (DsR...    35   0.051
At5g41070.1 68418.m04992 double-stranded RNA-binding domain (DsR...    33   0.16 
At3g62800.2 68416.m07056 double-stranded RNA-binding domain (DsR...    29   4.4  
At3g62800.1 68416.m07055 double-stranded RNA-binding domain (DsR...    29   4.4  
At2g26730.1 68415.m03206 leucine-rich repeat transmembrane prote...    28   7.7  

>At3g26932.1 68416.m03370 double-stranded RNA-binding domain
           (DsRBD)-containing protein contains Pfam profile
           PF00035: Double-stranded RNA binding motif
          Length = 301

 Score = 35.1 bits (77), Expect = 0.051
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +1

Query: 97  KSFLYTWCAKKGLT-PLFDIRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAA 270
           K+ L     + GL  P++    +GP H   F C V + G S+ G  ++ TKK A+ NAA
Sbjct: 31  KNLLQETAHRAGLDLPVYTSVRSGPGHIPTFSCTVELAGMSFNGE-SAKTKKQAEKNAA 88


>At1g09700.1 68414.m01089 double-stranded RNA-binding domain
           (DsRBD)-containing protein contains Pfam profile
           PF00035: Double-stranded RNA binding motif; supporting
           cDNA gi|12247456|gb|AF276440.1|AF276440
          Length = 419

 Score = 35.1 bits (77), Expect = 0.051
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +1

Query: 97  KSFLYTWCAKKGL-TPLFDIRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAAK 273
           KS L  +  K  L TP+++I   GP H+  F   V ++G  Y        +K A+ +AA+
Sbjct: 17  KSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAE 76

Query: 274 DFVSYLVRAGQIPQ 315
             +  L ++ ++ Q
Sbjct: 77  VALRELAKSSELSQ 90



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 181 RFLCEVRVEGFSYLGAGNSTTKKDAQMNAAK 273
           +F C V + G  Y GA  + TKKDA+++A +
Sbjct: 133 QFTCTVEIGGIKYTGAA-TRTKKDAEISAGR 162


>At5g41070.1 68418.m04992 double-stranded RNA-binding domain
           (DsRBD)-containing protein contains Pfam profile
           PF00035: Double-stranded RNA binding motif
          Length = 393

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
 Frame = +1

Query: 97  KSFLYTWCAKKGLT-PLFDIRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAAK 273
           K+ L     + GL  P++    +G  H   F C V + G ++ G  ++ TKK A+ NAA 
Sbjct: 89  KNLLQETAHRAGLDLPMYTSVRSGSCHFPGFSCTVELAGMTFTGE-SAKTKKQAEKNAAI 147

Query: 274 DFVSYLVRAGQIPQADVPEDVKAKA 348
              S L +   +   D  ++ +A A
Sbjct: 148 AAWSSLKKMSSLDSQDEEKEQEAVA 172


>At3g62800.2 68416.m07056 double-stranded RNA-binding domain
           (DsRBD)-containing protein weak similarity to  SP|P19525
           Interferon-induced, double-stranded RNA-activated
           protein kinase (EC 2.7.1.-) {Homo sapiens}; contains
           Pfam profile PF00035: Double-stranded RNA binding motif
          Length = 355

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +1

Query: 139 PLFDIRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAAKDFVSYL 291
           P++     GP H  RF C V   G ++  +    T K A+  AAK  V+ L
Sbjct: 21  PVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAAAKIAVASL 71


>At3g62800.1 68416.m07055 double-stranded RNA-binding domain
           (DsRBD)-containing protein weak similarity to  SP|P19525
           Interferon-induced, double-stranded RNA-activated
           protein kinase (EC 2.7.1.-) {Homo sapiens}; contains
           Pfam profile PF00035: Double-stranded RNA binding motif
          Length = 355

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +1

Query: 139 PLFDIRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAAKDFVSYL 291
           P++     GP H  RF C V   G ++  +    T K A+  AAK  V+ L
Sbjct: 21  PVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAAAKIAVASL 71


>At2g26730.1 68415.m03206 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 658

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 257 CASFLVVEFPAPKYENPSTRTSHRK 183
           C SF V   P+P   NPS R S +K
Sbjct: 226 CKSFFVSPSPSPSLINPSNRLSSKK 250


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,432,693
Number of Sequences: 28952
Number of extensions: 231153
Number of successful extensions: 442
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)