Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0187
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    40   4e-04
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    38   0.001
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.7  
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom...    27   2.7  
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.7  
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    27   3.6  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 20/36 (55%), Positives = 22/36 (61%)
 Frame = +3

Query: 618 VTKALXAQRXVVKXEHGKRVRKIRNSVHFRRPKTFE 725
           V KA  AQ+ V K  H K  RK+R S  FRRPKT E
Sbjct: 3   VGKAKGAQKTVQKGIHNKVARKVRTSTTFRRPKTLE 38


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 18/36 (50%), Positives = 22/36 (61%)
 Frame = +3

Query: 618 VTKALXAQRXVVKXEHGKRVRKIRNSVHFRRPKTFE 725
           V KA  AQ+ V K  H K  +K+R S  FRRPKT +
Sbjct: 3   VAKAKGAQKTVQKGIHNKVAKKVRTSTTFRRPKTLQ 38


>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -1

Query: 611 HYFFLSLNPSLFGLRCNLPIWKLLAWVWQFWLLL 510
           ++  LS+ P +  +         + W W+FW+LL
Sbjct: 172 YFTVLSIGPGIAPIISGFISQSSIGWQWEFWILL 205


>SPBPB2B2.16c |||MFS family membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -1

Query: 611 HYFFLSLNPSLFGLRCNLPIWKLLAWVWQFWLLL 510
           ++  LS+ P +  +         + W W+FW+LL
Sbjct: 172 YFTVLSIGPGIAPIISGFISQSSIGWQWEFWILL 205


>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -1

Query: 611 HYFFLSLNPSLFGLRCNLPIWKLLAWVWQFWLLL 510
           ++  LS+ P +  +         + W W+FW+LL
Sbjct: 172 YFTVLSIGPGIAPIISGFISQSSIGWQWEFWILL 205


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 608 YFF-LSLNPSLFGLRCNLPIWKLLAWVWQFWLLL 510
           YF  + L P++  +         ++W W+FW+LL
Sbjct: 169 YFLGICLGPAIAPIASGFIAGSSISWRWEFWILL 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,354,719
Number of Sequences: 5004
Number of extensions: 18740
Number of successful extensions: 47
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)