Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0187
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57676| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.96 
SB_39921| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_22050| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)                  29   5.1  
SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22)                 28   6.7  

>SB_57676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 624 KALXAQRXVVKXEHGKRVRKIRNSVHFRRPKT 719
           KA  A++ V K     + +K+R SV F RPKT
Sbjct: 138 KAQKAKKAVQKGVRAAKTKKVRTSVKFHRPKT 169


>SB_39921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 133 TCVSQNTGTCPESSCACPEISCACPETSCACPESS 237
           T     T   P+++ A PE + A PE + A PE++
Sbjct: 33  TAAPDATTAAPDATTAAPEATTAAPEATTAAPEAT 67



 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 133 TCVSQNTGTCPESSCACPEISCACPETSCACPESS 237
           T     T   P+++ A P+ + A PE + A PE++
Sbjct: 26  TAAPMETTAAPDATTAAPDATTAAPEATTAAPEAT 60



 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 133 TCVSQNTGTCPESSCACPEISCACPETSCACP 228
           T     T   PE++ A PE + A PE + A P
Sbjct: 40  TAAPDATTAAPEATTAAPEATTAAPEATTAAP 71


>SB_22050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 136 CVSQNTGTCPESSCACPEISCACPETSC 219
           CVS      P  + ACP ++ AC   SC
Sbjct: 80  CVSYRYDRVPYLTSACPNVTSACQRVSC 107


>SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)
          Length = 1536

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 136  CVSQNTGTCPESSCACPEISCACPETSCACPESS 237
            C+  N   C + +  C   S  CP+ S  CP+S+
Sbjct: 998  CLKDNV-MCSKDAVTCQNRSVTCPKYSVLCPDSN 1030



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 142  SQNTGTCPESSCACPEISCACPETSCACPESS 237
            S++  TC   S  CP+ S  CP+++    E+S
Sbjct: 1006 SKDAVTCQNRSVTCPKYSVLCPDSNVEPNETS 1037


>SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 274

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 145 QNTGTCPESSCACPEISCACPETSCACPESS 237
           +   T PE + A PE +   PE +  CPE +
Sbjct: 84  EGNSTSPEGNSASPEGNSTSPEGNSTCPEGN 114


>SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22)
          Length = 1421

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 136 CVSQNTGTCPESSCACPEISCACPETSCAC 225
           C   +TG  P ++C C  I    P+T+C C
Sbjct: 892 CCLMDTGL-PHTACQCCLIGTGLPQTACQC 920


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,234,102
Number of Sequences: 59808
Number of extensions: 143641
Number of successful extensions: 550
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)