Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0187
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal prote...    37   0.013
Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical pr...    36   0.022
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ...    30   1.9  
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ...    30   1.9  
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ...    30   1.9  
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.      30   1.9  
AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical ...    29   4.5  
AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical ...    29   4.5  

>U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 25.1 protein.
          Length = 147

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = +3

Query: 624 KALXAQRXVVKXEHGKRVRKIRNSVHFRRPKTFE 725
           KAL A++ VVK +     R++R SVHFRRP T +
Sbjct: 11  KALDAKKKVVKGKRTTHRRQVRTSVHFRRPVTLK 44


>Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical
           protein F52B5.6 protein.
          Length = 146

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 17/34 (50%), Positives = 22/34 (64%)
 Frame = +3

Query: 618 VTKALXAQRXVVKXEHGKRVRKIRNSVHFRRPKT 719
           V KA+ A++ VVK       + +R SVHFRRPKT
Sbjct: 8   VGKAIQAKKAVVKGSKTNVRKNVRTSVHFRRPKT 41


>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4c protein.
          Length = 1045

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +1

Query: 133 TCVSQNTGTCPESSCACPEISCACPETSCACP 228
           TC     G   E SC C + SC+     C CP
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCP 620


>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4b protein.
          Length = 1070

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +1

Query: 133 TCVSQNTGTCPESSCACPEISCACPETSCACP 228
           TC     G   E SC C + SC+     C CP
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCP 620


>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4a protein.
          Length = 1111

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +1

Query: 133 TCVSQNTGTCPESSCACPEISCACPETSCACP 228
           TC     G   E SC C + SC+     C CP
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCP 620


>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
          Length = 1111

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +1

Query: 133 TCVSQNTGTCPESSCACPEISCACPETSCACP 228
           TC     G   E SC C + SC+     C CP
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCP 620


>AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8b protein.
          Length = 219

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 172 SCACPEISCACPETSCACPES 234
           +C   E SC+C    C+CPES
Sbjct: 99  ACDDSECSCSCSGGECSCPES 119


>AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8a protein.
          Length = 345

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 172 SCACPEISCACPETSCACPES 234
           +C   E SC+C    C+CPES
Sbjct: 225 ACDDSECSCSCSGGECSCPES 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,676,957
Number of Sequences: 27780
Number of extensions: 116439
Number of successful extensions: 434
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)