Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0187
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) / polyc...    31   0.59 
At1g32190.1 68414.m03959 expressed protein                             31   0.59 
At3g55280.1 68416.m06139 60S ribosomal protein L23A (RPL23aB) va...    28   5.5  
At2g39460.1 68415.m04843 60S ribosomal protein L23A (RPL23aA) id...    28   5.5  

>At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) /
           polycomb-group protein identical to polycomb group
           [Arabidopsis thaliana] GI:1903019 (curly leaf); contains
           Pfam profile PF00856: SET domain
          Length = 902

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +1

Query: 136 CVSQNTGTCPESSCACPEISCACPETSCACPESSC 240
           C     GTC E  C CP+ SC      C C +S C
Sbjct: 665 CPCLLNGTCCEKYCGCPK-SCKNRFRGCHCAKSQC 698


>At1g32190.1 68414.m03959 expressed protein
          Length = 422

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 157 TCPESSCACPEISCACPETSCACPESSC 240
           +CP+  C  P  SC C    C C + SC
Sbjct: 306 SCPKPRCPKPSCSCGCGCGDCGCFKCSC 333



 Score = 30.7 bits (66), Expect = 1.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 151 TGTCPESSCACPEISCACPETSCACPESSC 240
           +G C   SC+CP+  C  P  SC C    C
Sbjct: 298 SGLC-RPSCSCPKPRCPKPSCSCGCGCGDC 326



 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 169 SSCACPEISCACPETSCACPESSC 240
           SSC CP   C+       CP+ SC
Sbjct: 350 SSCCCPTFKCSSCFGKPKCPKCSC 373


>At3g55280.1 68416.m06139 60S ribosomal protein L23A (RPL23aB)
           various ribosomal L23a proteins
          Length = 154

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 615 PVTKALXAQRXVVKXEHGKR-VRKIRNSVHFRRPKT 719
           P  KAL A + V   +  K+  +KIR  V F RPKT
Sbjct: 14  PKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKT 49


>At2g39460.1 68415.m04843 60S ribosomal protein L23A (RPL23aA)
           identical to GB:AF034694
          Length = 154

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 615 PVTKALXAQRXVVKXE-HGKRVRKIRNSVHFRRPKT 719
           P  KAL A + V   +   K+ +KIR  V F RPKT
Sbjct: 14  PKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKT 49


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,326,993
Number of Sequences: 28952
Number of extensions: 104576
Number of successful extensions: 268
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)