Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0186
(784 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 31 0.14
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 29 0.99
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 28 1.3
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 28 1.3
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 28 1.7
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 27 3.0
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 27 4.0
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 27 4.0
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 7.0
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|... 25 9.3
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 31.5 bits (68), Expect = 0.14
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +2
Query: 644 SSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMXGQTXR 772
S DYHL++ L E YK QR GK LK++ T +
Sbjct: 31 SHLTDYHLMEKLGEGTFGEVYKSQRRKDGKVYALKRILMHTEK 73
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 28.7 bits (61), Expect = 0.99
Identities = 18/75 (24%), Positives = 31/75 (41%)
Frame = +2
Query: 497 KLTGSVTDLITYRAPANTSWESGASALEHALKLESDVTNSIREVIKTCESSFNDYHLVDY 676
+L S +L ++ S S S L+ + +E + + V++ CE F + Y
Sbjct: 144 ELNFSTEELSSFDTTLLNSDTSKLSGLDDSSFMEEEFVWQVDNVLQECEKKFTPHSKGSY 203
Query: 677 LSGEFLDEQYKGQRD 721
L E KG+ D
Sbjct: 204 LKENLKSELRKGRLD 218
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 28.3 bits (60), Expect = 1.3
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 510 P*PTSSRTGPPQTRRGRAAHQPSSTPSSWRV 602
P PT+ P+ RG+A ++PS +W++
Sbjct: 337 PVPTNVVKANPRVNRGKAGYEPSENIINWKI 367
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 578 EHALKLESDVTNSIREVIKTCESSFNDYHLV--DYLSGEFLDEQYKGQRDL 724
E +L V N I ++KTC +S ND ++ DY+S + + K Q+DL
Sbjct: 749 ESQKELMYGVRNDIDALVKTCTTSLNDADIILSDYISDQKSKFESK-QQDL 798
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 569 SALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQY 706
S L+ K +S+ N IR +I E++ H +S FL+E Y
Sbjct: 669 SQLKKVYKPKSEAINPIRTIISNWENNSYTNHSSYQISNLFLEEDY 714
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +1
Query: 607 HQQHPGGHQDLREQLQRLPPGRLFVRGIPRRTVQGPT 717
H QH H+ +E L+ PG + P + Q PT
Sbjct: 196 HHQHIQAHEMAQESLETRNPGNISSSSAPLASDQSPT 232
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +1
Query: 358 NPVLSHG-GLLLDRYGEPPRLREAILRC 438
+P L +G G+L DRYG EA ++C
Sbjct: 437 DPKLWYGIGILYDRYGSHEHAEEAFMQC 464
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 590 KLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQ 703
++E DV S++ + DYH LSGE LD +
Sbjct: 146 EVEKDVQGSLKSKDGFRSVTLKDYHRQKLLSGEILDAE 183
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 7.0
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +1
Query: 613 QHPGGHQDLREQ---LQRLPPGRLFVRG--IPRRTVQGPTRPRRQGLDPQ 747
Q PG Q + Q +Q + P R ++ P+RT P P+R G+ PQ
Sbjct: 578 QMPGMQQPMAPQRTGMQPMMPQRTGMQQPMAPQRTGMQPMMPQRTGMQPQ 627
>SPCC11E10.04 |||mitochondrial ATPase expression protein
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 443
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +3
Query: 33 HSRIGLIYLNFLRIISRLLRQCV*RLDLYN 122
H+RI I L F+R+ S++ R CV +++Y+
Sbjct: 327 HARIKNIEL-FIRLYSQMYRHCVPIIEIYD 355
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,698,486
Number of Sequences: 5004
Number of extensions: 51748
Number of successful extensions: 151
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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