Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0186
(784 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 77 2e-14
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 62 6e-10
12_02_0911 + 24236374-24237582 34 0.11
03_05_0650 - 26423829-26424179,26424379-26424612,26424961-264252... 31 1.4
03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551 29 3.2
09_02_0549 + 10485415-10486107 29 4.2
02_05_0624 - 30451032-30451140,30451294-30451409,30451506-304515... 29 4.2
01_06_1162 + 35010414-35011106 29 5.5
02_05_0448 - 29100674-29100716,29100821-29100902,29101010-291011... 28 7.3
02_01_0485 + 3487578-3487635,3488281-3488399,3488600-3488698,348... 28 7.3
06_03_0355 + 19822110-19824491 28 9.6
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 76.6 bits (180), Expect = 2e-14
Identities = 51/151 (33%), Positives = 77/151 (50%), Gaps = 3/151 (1%)
Frame = +2
Query: 311 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLM 490
C + +QI E AS Y ++ AYF D V GFAK F +++ EER+HA KL+ Y M
Sbjct: 91 CEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNM 150
Query: 491 RG---KLTGSVTDLITYRAPANTSWESGASALEHALKLESDVTNSIREVIKTCESSFNDY 661
RG +L VT L + P A+E AL LE V + + + S ND
Sbjct: 151 RGGRVRLQSIVTPLTEFDHPEK---GDALYAMELALALEKLVNEKLHN-LHSVASRCNDP 206
Query: 662 HLVDYLSGEFLDEQYKGQRDLAGKASTLKKM 754
L D++ EFL+EQ + + ++ + L+++
Sbjct: 207 QLTDFVESEFLEEQVEAIKKISEYVAQLRRV 237
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 61.7 bits (143), Expect = 6e-10
Identities = 48/140 (34%), Positives = 68/140 (48%), Gaps = 3/140 (2%)
Frame = +2
Query: 344 EVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG---KLTGSV 514
E AS Y ++ AYF D V GFAK F +++ EER+HA KLI Y MRG +L V
Sbjct: 134 EYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRLQSIV 193
Query: 515 TDLITYRAPANTSWESGASALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFL 694
T L + P E G AL L + V C ND L D++ EFL
Sbjct: 194 TPLTEFDHP-----EKG-DALYGELLSACPIYVFYSMVASRC----NDPQLTDFVESEFL 243
Query: 695 DEQYKGQRDLAGKASTLKKM 754
+EQ + + ++ + L+++
Sbjct: 244 EEQVEAIKKISEYVAQLRRV 263
>12_02_0911 + 24236374-24237582
Length = 402
Score = 34.3 bits (75), Expect = 0.11
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = +2
Query: 500 LTGSVTDLITYRAPANTSW--ESGASALEHA--LKLESDVTNSIREVIKTCESSFNDYHL 667
L VT+L+ R A ++GA+A + A L+L+ S +EV +H+
Sbjct: 148 LPSKVTNLLLLRLKARNQQVVDAGAAAPQEAALLQLQQQTPASCQEVFVRSHGEEYGFHV 207
Query: 668 VDYLSGEFLDEQYKGQRDL 724
D+LS +EQY G L
Sbjct: 208 DDFLSDACSNEQYSGDSSL 226
>03_05_0650 -
26423829-26424179,26424379-26424612,26424961-26425236,
26425372-26425648,26425751-26425764,26425843-26425989,
26426306-26426366,26426570-26426604,26426688-26426882,
26428230-26428439,26428865-26428940,26429519-26429799
Length = 718
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +2
Query: 581 HALKLESDVTNSIREVIK-TCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKK 751
H L V S +E I T ES F YH+ YLS + + + K Q+ + G KK
Sbjct: 141 HFTVLVRGVPKSTKESISCTVESFFTKYHVSSYLSHQIIYKVGKLQKIVTGAKKAYKK 198
>03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551
Length = 589
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 563 GASALEHALKLESDVTNSIREVIKTCESSFNDYHLV 670
G LE+ +D+TN+ E I T SS ND+ LV
Sbjct: 381 GCPHLEYWAVHVTDITNAALEAIGTYSSSLNDFRLV 416
>09_02_0549 + 10485415-10486107
Length = 230
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +1
Query: 514 NRPHHVQGPRKHVVGERRISPRARPQA--GE*RHQQHPGGHQDLREQLQRLPPGRLFVRG 687
NR +VQ P + ++ + + R P A +HQ+ G +L G +R
Sbjct: 97 NRHLNVQPPPQRIIVKGTVKGRIVPPAIVSSLQHQRQQGKQCQENNSSLQLQRGSTLLRQ 156
Query: 688 IPRRTVQGPTRP 723
PR+ + P RP
Sbjct: 157 HPRQVLSAPGRP 168
>02_05_0624 -
30451032-30451140,30451294-30451409,30451506-30451580,
30452033-30452093,30452198-30452424
Length = 195
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 371 AMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLL 487
A+ YF + TV P A FF + +RE T L+D LL
Sbjct: 115 ALPKYFQVGTVIEP--ASEFFSSRLTKRERKTTLVDELL 151
>01_06_1162 + 35010414-35011106
Length = 230
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +1
Query: 514 NRPHHVQGPRKHVVGERRISPRARPQA--GE*RHQQHPGGHQDLREQLQRLPPGRLFVRG 687
NR +VQ P + ++ + + R P A +HQ+ G +L G +R
Sbjct: 97 NRHLNVQPPPQRIIVKGTVKGRIVPPATVSSLQHQRQQGKQCQENNSSLQLQRGGTLLRQ 156
Query: 688 IPRRTVQGPTRP 723
PR+ + P RP
Sbjct: 157 HPRQVLSAPGRP 168
>02_05_0448 -
29100674-29100716,29100821-29100902,29101010-29101130,
29101481-29101546,29101628-29101735,29102083-29102148,
29102605-29102633,29102773-29102902
Length = 214
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -1
Query: 292 PLIPDGDGADVTLCSCGRS*GSNESEDSKENSPHLNFSYNHRFFDDTQKN 143
P+I G+ D + C D KE PH RFF+D +KN
Sbjct: 129 PMIDQGEKDDKIIAVCADDPEYRHFRDIKEIPPH-RLQEIRRFFEDYKKN 177
>02_01_0485 +
3487578-3487635,3488281-3488399,3488600-3488698,
3488795-3488851,3488954-3489109,3489227-3489311,
3489489-3489579,3489693-3489857,3489923-3490045,
3490244-3490319,3490486-3490633,3490769-3491934,
3492041-3492231,3492321-3492513
Length = 908
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 493 GKADRLRNRPHHVQGPRKHVVGERRISPRARPQAGE*R-HQQHPGGHQDLREQ 648
G + + ++P ++Q P +H P+ +PQ + HQQ P HQ +++Q
Sbjct: 502 GNSIQGHSQPEYLQQPLQHCQSFNEQKPQLQPQQQQQESHQQQP-QHQQMQQQ 553
>06_03_0355 + 19822110-19824491
Length = 793
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Frame = +2
Query: 419 AKLFFDAATEEREHATKLIDYLL-MRGKLTGSVTDLITYRAPANTSWESGASALEHALKL 595
A +F++ E + YL M + + L + R W++ EH L +
Sbjct: 487 ASMFYEQKERELQDVLVEKQYLANMLQEKEQIIQSLNSARFEQENKWQAELRRFEHDLNV 546
Query: 596 ESDVTNSIREVIKTCESSFNDY 661
+ + R +K +SF++Y
Sbjct: 547 MAQLVTGYRRALKQNRASFDEY 568
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,049,422
Number of Sequences: 37544
Number of extensions: 411286
Number of successful extensions: 1196
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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