Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0186
(784 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.) 90 2e-18
SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.) 89 5e-18
SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.) 88 7e-18
SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.) 74 1e-13
SB_7534| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 5e-11
SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012) 46 3e-05
SB_7503| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_46811| Best HMM Match : Ferritin (HMM E-Value=0.0021) 42 4e-04
SB_44028| Best HMM Match : RVT_1 (HMM E-Value=1.3) 35 0.085
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30) 33 0.34
SB_41870| Best HMM Match : DUF963 (HMM E-Value=0.22) 33 0.34
SB_56909| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_30861| Best HMM Match : Peptidase_A17 (HMM E-Value=2.1e-40) 31 1.1
SB_25615| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-10) 31 1.1
SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 31 1.1
SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053) 30 1.8
SB_33587| Best HMM Match : SAMP (HMM E-Value=2.7) 30 2.4
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_7301| Best HMM Match : S-antigen (HMM E-Value=2.1) 29 5.6
SB_36849| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_33125| Best HMM Match : Pkinase (HMM E-Value=0) 28 7.4
SB_32938| Best HMM Match : DUF204 (HMM E-Value=0.6) 28 7.4
SB_29682| Best HMM Match : PKD_channel (HMM E-Value=0.0011) 28 7.4
SB_57416| Best HMM Match : rve (HMM E-Value=0.0011) 28 9.8
SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_53292| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_17318| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
>SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 89.8 bits (213), Expect = 2e-18
Identities = 53/150 (35%), Positives = 79/150 (52%)
Frame = +2
Query: 305 QTCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYL 484
+ C + KQI E+ AS YL+M +F D V PGF K F A+ EEREHA KL+ +
Sbjct: 197 EECEAGINKQINLELYASYAYLSMAFHFDRDDVALPGFHKYFLKASHEEREHAEKLMKFQ 256
Query: 485 LMRGKLTGSVTDLITYRAPANTSWESGASALEHALKLESDVTNSIREVIKTCESSFNDYH 664
RG G + L + P W G +++ AL LE V ++ ++ K E D
Sbjct: 257 NERG---GRIV-LQDIKKPEKDEWGCGMDSIQVALDLEKHVNQALLDLHKIAE-KHGDAQ 311
Query: 665 LVDYLSGEFLDEQYKGQRDLAGKASTLKKM 754
+ D++ G FL EQ + ++LAG + LK++
Sbjct: 312 MTDFIEGNFLTEQVEAIKELAGHLTNLKRV 341
Score = 67.3 bits (157), Expect = 1e-11
Identities = 41/127 (32%), Positives = 66/127 (51%)
Frame = +2
Query: 380 AYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKLTGSVTDLITYRAPANTSWE 559
A+F D ++ PGFA F AA EE HA +++L RG G V L P W
Sbjct: 2 AHFGRDDIHLPGFAAFFKKAAEEEYTHAHMFMEFLNKRG---GRV-KLHHIMKPCRDHWG 57
Query: 560 SGASALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKAS 739
+G A+ AL LE ++ +++ ++ + +++ D + D+L FL EQ + LA S
Sbjct: 58 NGLMAMRDALYLEKEINHALLDLHQVADTN-RDPQVQDFLESNFLGEQVDSIKTLANYVS 116
Query: 740 TLKKMXG 760
TL+++ G
Sbjct: 117 TLQRLGG 123
>SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 88.6 bits (210), Expect = 5e-18
Identities = 51/144 (35%), Positives = 76/144 (52%)
Frame = +2
Query: 323 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKL 502
+ KQI E+ AS Y++M +F D V PGF K F +A+ EEREHA KL + L RG
Sbjct: 150 VNKQINLELYASYVYMSMAFHFDRDDVALPGFHKYFMEASHEEREHAEKLAKFQLQRG-- 207
Query: 503 TGSVTDLITYRAPANTSWESGASALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLS 682
G + L + P W G ++ AL LE V ++ ++ K E D + D+L
Sbjct: 208 -GRIV-LQDIKRPERDDWGCGQDVIQAALDLEKHVNQALHDLHKVAE-KHGDSQMQDWLE 264
Query: 683 GEFLDEQYKGQRDLAGKASTLKKM 754
+L EQ + ++LAG + LK++
Sbjct: 265 SHYLTEQVEAIKELAGHMTNLKRV 288
>SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 289
Score = 88.2 bits (209), Expect = 7e-18
Identities = 52/144 (36%), Positives = 76/144 (52%)
Frame = +2
Query: 323 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKL 502
+ KQI E+ AS Y++M +F D V PGF K F A+ EEREHA KL + L RG
Sbjct: 135 VNKQINLELYASYVYMSMAYHFDRDDVALPGFHKYFMKASHEEREHAEKLAKFQLQRG-- 192
Query: 503 TGSVTDLITYRAPANTSWESGASALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLS 682
G + L + P W G A++ AL LE V ++ ++ K E D + D+L
Sbjct: 193 -GRIV-LQDIKRPERDDWGCGQDAIQAALDLEKHVNQALLDLHKVAE-KHGDSQMQDWLE 249
Query: 683 GEFLDEQYKGQRDLAGKASTLKKM 754
+L EQ + ++LAG + LK++
Sbjct: 250 SHYLTEQVEAIKELAGHLTNLKRV 273
>SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 74.1 bits (174), Expect = 1e-13
Identities = 51/150 (34%), Positives = 71/150 (47%)
Frame = +2
Query: 305 QTCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYL 484
+ C + KQI E+ AS Y +M YF + V+ PGF K F A EEREHA K
Sbjct: 10 EECEAGINKQINLELYASYVYTSMACYFDREDVHLPGFHKFFKKQAHEEREHAEK----- 64
Query: 485 LMRGKLTGSVTDLITYRAPANTSWESGASALEHALKLESDVTNSIREVIKTCESSFNDYH 664
P W SG A++ AL LE V ++ E+ KT E + D
Sbjct: 65 -----------------KPERDEWGSGLEAMQTALDLEKHVNQALIELEKTAEKN-GDAQ 106
Query: 665 LVDYLSGEFLDEQYKGQRDLAGKASTLKKM 754
+ D++ FL EQ + R+L+G + LKK+
Sbjct: 107 MSDFIEDHFLTEQVESIRELSGYIAVLKKV 136
>SB_7534| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 65.3 bits (152), Expect = 5e-11
Identities = 39/96 (40%), Positives = 51/96 (53%)
Frame = +2
Query: 323 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKL 502
+ KQI E+ AS Y++M +F D V PGF K F A+ EEREHA KL + L RG
Sbjct: 18 VNKQINLELYASYVYMSMAFHFDRDDVALPGFHKYFIKASHEEREHAEKLAKFQLQRG-- 75
Query: 503 TGSVTDLITYRAPANTSWESGASALEHALKLESDVT 610
G + L + P W G A++ AL LE+ T
Sbjct: 76 -GRIV-LQDIKRPERDDWGCGQDAIQAALDLENTST 109
>SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012)
Length = 126
Score = 46.4 bits (105), Expect = 3e-05
Identities = 22/47 (46%), Positives = 29/47 (61%)
Frame = +2
Query: 323 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHA 463
+ KQI +E+ A YL+M +F D +N PGF K F A+ EE EHA
Sbjct: 38 INKQINKELYAHYTYLSMAFHFDRDDINLPGFNKFFKKASKEEWEHA 84
>SB_7503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 46.0 bits (104), Expect = 3e-05
Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 32/159 (20%)
Frame = +2
Query: 383 YFSIDTVNRPGFAKLFFDAATEEREHA---------TK-----LIDYLLMR--GKLT--G 508
+F D +N PGF K F A+ EE EHA TK I +LL + LT G
Sbjct: 32 HFDRDDINLPGFNKFFKKASKEEWEHAQMVKTAALQTKCYRKLTIVWLLFQFMAYLTKRG 91
Query: 509 SVTDLITYRAPANTSWESGASALEHALKLESDVTNSIR------------EVIKTCES-- 646
L P W +G A+E AL LE ++ +S++ +++ C
Sbjct: 92 GRVKLNDIPTPCRDQWGNGLMAMEDALALEKEILSSLQALHRKAQEENDAQIVTMCAQIP 151
Query: 647 SFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMXGQ 763
+ + D++ FL+EQ + L+ STL+++ G+
Sbjct: 152 RYPSLQMQDFIEETFLNEQMDSIKQLSNYVSTLRRLGGE 190
>SB_46811| Best HMM Match : Ferritin (HMM E-Value=0.0021)
Length = 73
Score = 42.3 bits (95), Expect = 4e-04
Identities = 25/69 (36%), Positives = 35/69 (50%)
Frame = +2
Query: 437 AATEEREHATKLIDYLLMRGKLTGSVTDLITYRAPANTSWESGASALEHALKLESDVTNS 616
A+ EEREHA KL + L RG G + L + P W G A++ AL LE V +
Sbjct: 3 ASHEEREHAEKLAKFQLQRG---GRIV-LQDIKRPERDDWGCGQDAIQAALDLEKHVNQA 58
Query: 617 IREVIKTCE 643
+ ++ K E
Sbjct: 59 LHDLHKVAE 67
>SB_44028| Best HMM Match : RVT_1 (HMM E-Value=1.3)
Length = 249
Score = 34.7 bits (76), Expect = 0.085
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +2
Query: 383 YFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKLTGSVTDLI 526
+F++ +N+PG ++ FDAA+E + T L YLL T S+T ++
Sbjct: 30 HFAVTNINKPGKLRIIFDAASEYQ--GTSLNKYLLHGPDCTNSLTGVL 75
>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
Length = 3071
Score = 32.7 bits (71), Expect = 0.34
Identities = 18/42 (42%), Positives = 27/42 (64%)
Frame = +2
Query: 557 ESGASALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLS 682
ES A+ LEH L+ E++ N +R+ T SS N+Y V+YL+
Sbjct: 1823 ESKAADLEHRLETEANDKNKLRQENITLASSLNEYK-VNYLT 1863
>SB_41870| Best HMM Match : DUF963 (HMM E-Value=0.22)
Length = 233
Score = 32.7 bits (71), Expect = 0.34
Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Frame = -2
Query: 636 VLMTSRMLLVTSLSSLRACSRADAPLSHDVFAGALYVM---RSV--TEPVSFPL---MSR 481
VL TSR +L TS S L A SR+ S V A + Y++ RSV T SF +
Sbjct: 144 VLATSRSVLATSRSVL-ATSRSVLATSRSVLATSRYILATSRSVLATGRSSFATSRYILA 202
Query: 480 *SMSLVACSRSSVAASKNSFA 418
S S++A SRS +A ++SFA
Sbjct: 203 TSRSVLATSRSVLATGRSSFA 223
>SB_56909| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1379
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +2
Query: 383 YFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKLTGSVTDLI 526
+F++ +N+PG ++ FDAA+E + T L LL T S+T ++
Sbjct: 350 HFAVTNINKPGKLRIIFDAASEYQ--GTSLNKNLLHGPDCTNSLTGVL 395
>SB_30861| Best HMM Match : Peptidase_A17 (HMM E-Value=2.1e-40)
Length = 1740
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +2
Query: 383 YFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKLTGSVTDLI 526
+F++ +N+PG ++ FDAA+E + T L LL T S+T ++
Sbjct: 868 HFAVTNINKPGKLRIIFDAASEYQ--GTSLNKNLLHGPDCTNSLTGVL 913
>SB_25615| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-10)
Length = 475
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +2
Query: 383 YFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKLTGSVTDLI 526
+F++ +N+PG ++ FDAA+E + T L LL T S+T ++
Sbjct: 151 HFAVTNINKPGKLRIIFDAASEYQ--GTSLNKNLLHGPDCTNSLTGVL 196
>SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 1244
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +2
Query: 383 YFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKLTGSVTDLI 526
+F++ +N+PG ++ FDAA+E + T L LL T S+T ++
Sbjct: 667 HFAVTNINKPGKLRIIFDAASEYQ--GTSLNKNLLHGPDCTNSLTGVL 712
>SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1515
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +2
Query: 383 YFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKLTGSVTDLI 526
+F++ +N+PG ++ FDAA+E + T L LL T S+T ++
Sbjct: 945 HFAVTNINKPGKLRIIFDAASEYQ--GTSLNKNLLHGPDCTNSLTGVL 990
>SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)
Length = 1152
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +1
Query: 271 RHHQG*VAHHGADLLQHDEETDPGGSG 351
RHHQ AHHG L+HD E D GSG
Sbjct: 811 RHHQH-GAHHG---LKHDTENDASGSG 833
>SB_33587| Best HMM Match : SAMP (HMM E-Value=2.7)
Length = 488
Score = 29.9 bits (64), Expect = 2.4
Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +1
Query: 508 LRNRPHHVQGPRKHVVGERRISPRARPQAGE*RHQQHPGGHQDLREQLQRLPPGRLFV-R 684
LR P RKH+ RR P +PQ E P ++ L R PP + V
Sbjct: 418 LRESPQCESVARKHM--PRRSPPAYKPQLKE-----SPKVNRIRDAHLLRPPPPLVRVAE 470
Query: 685 GIPRRTVQGPTRPRRQG 735
+PR T PT RRQG
Sbjct: 471 DVPRNTDTSPTLSRRQG 487
>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = +1
Query: 532 QGPRKHVVGERRISPRARPQAGE*RHQQHPGGHQDLREQLQRLPPGRLFVRGIPRRTVQG 711
QGP ++ P +P + ++Q PGG Q ++ PP +G P+R
Sbjct: 449 QGPPSQSTPSQQAPPTKQPMQPQHQYQARPGG----PPQQRQYPPSSTPQQGFPQRPGSP 504
Query: 712 PT 717
PT
Sbjct: 505 PT 506
>SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1283
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = +1
Query: 502 DRL-RNRPHHVQGPRKHVVGERRISPRARP---QAGE*RHQQHPGGHQDL 639
DRL +RP + G +H+ R P P G HQ HP GHQ +
Sbjct: 951 DRLTHDRPGLIMGQDRHMADYRE--PHREPGGVHEGPFPHQPHPNGHQPM 998
>SB_7301| Best HMM Match : S-antigen (HMM E-Value=2.1)
Length = 682
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = +1
Query: 502 DRL-RNRPHHVQGPRKHVVGERRISPRARP---QAGE*RHQQHPGGHQDL 639
DRL +RP + G +H+ R P P G HQ HP GHQ +
Sbjct: 84 DRLTHDRPGLIMGQDRHMADYRE--PHREPGGVHEGPFPHQPHPNGHQPM 131
>SB_36849| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 634
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -1
Query: 319 VVASLLHGEPLIPDGDGADVTLCSCGRS*GSNESEDSKENSPH 191
V+A LL G+P+ P G D L + G+ E KE +PH
Sbjct: 252 VLAELLLGQPIFPGDSGVD-QLVEIIKVLGTPTREQIKEMNPH 293
>SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 937
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 522 SSRTGPPQTRRGRAAHQPSSTPSS 593
++RTGPPQ+R+ H+ S+T S
Sbjct: 419 ANRTGPPQSRQAVPRHRTSATADS 442
>SB_32938| Best HMM Match : DUF204 (HMM E-Value=0.6)
Length = 433
Score = 28.3 bits (60), Expect = 7.4
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Frame = +2
Query: 359 IQYLAMG--AYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGK--LTGSVTDLI 526
I +LA G AYF +D RPG A + + +L+ Y L R + L G + D
Sbjct: 193 IVWLASGRVAYFFLDYSKRPGIAAIVIVGGCFVVQPLIQLMHYGLYRARIWLQGVLLDGT 252
Query: 527 TYRA---PANTSWESGASAL----EHALKLESDVTNS 616
+ R NT++ +G A E A K +T S
Sbjct: 253 SVRGGGEGVNTAYSNGRDAFRRTEERAFKTSLSLTRS 289
>SB_29682| Best HMM Match : PKD_channel (HMM E-Value=0.0011)
Length = 318
Score = 28.3 bits (60), Expect = 7.4
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +2
Query: 605 VTNSIREVIKTCESSFNDYHLVDYLSGEFLDE 700
+ ++ EV E NDY ++DY+ +F ++
Sbjct: 187 INEALEEVSSDAEKQANDYEIIDYMMHKFKEQ 218
>SB_57416| Best HMM Match : rve (HMM E-Value=0.0011)
Length = 807
Score = 27.9 bits (59), Expect = 9.8
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +2
Query: 383 YFSIDTVNRPGFAKLFFDAATEEREHA 463
+F + + N+PG ++ FDAA + R ++
Sbjct: 138 HFGVTSANKPGCVRIVFDAAAKTRTNS 164
>SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1808
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 229 SNESEDSKENSPHLNFSYNHRFFDDT 152
+ ES KEN PH + N R +D+T
Sbjct: 413 AEESTSDKENVPHCSHGNNERCYDNT 438
>SB_53292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 659
Score = 27.9 bits (59), Expect = 9.8
Identities = 20/99 (20%), Positives = 42/99 (42%)
Frame = +2
Query: 326 RKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKLT 505
RK +EE+ Q + N+PG ++ FDAA E + L LL +T
Sbjct: 39 RKLTEEELRTESQTTWFLPTHPVQNPNKPGKLRIVFDAAAEFQ--GISLNKALLSGPDVT 96
Query: 506 GSVTDLITYRAPANTSWESGASALEHALKLESDVTNSIR 622
++ ++ N + A+ H +++ + ++++
Sbjct: 97 NNLVAVLLQFCQGNIGIAADVEAMFHQIRVRKEDQDALQ 135
>SB_17318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 261
Score = 27.9 bits (59), Expect = 9.8
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +2
Query: 524 ITYRAPANTSWESGASALEHALKLESD 604
+TY + +W SG L H++K++ D
Sbjct: 164 VTYHCLNSAAWSSGKGDLNHSIKIKGD 190
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,289,884
Number of Sequences: 59808
Number of extensions: 438773
Number of successful extensions: 1190
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -