Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0186
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    27   0.20 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.8  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 533 RAPANTSWESGASALEHALKLESDVTNSI 619
           R P   SW S  + +  A KL+ ++ NSI
Sbjct: 149 RTPTEASWHSPEAHISVAQKLQKEIPNSI 177


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 621 RMLLVTSLSSLRACSRADAPLSHDVFAGALYVMRSV 514
           R+LL++++  +  CS  +  L  D+F G   ++R V
Sbjct: 10  RILLISAVFCVGLCSEDEERLVRDLFRGYNKLIRPV 45


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +1

Query: 511 RNRPHHVQGPRKHVVGERRISPRARPQAGE*RHQQHPGGHQDLREQLQRLPPG 669
           +++P H Q    H     +   +A+PQ  + + QQ P   Q  ++Q Q+   G
Sbjct: 806 QSQPPHQQ-LHHHQSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQQQQQQQRG 857


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 38  ANRTYLFEFPANYKSPSAPVCVKA 109
           A RTYLF+   N      P  V A
Sbjct: 545 AGRTYLFDLDYNESEEQCPYTVDA 568


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +1

Query: 643  EQLQRLPPGRLFVRGIPR 696
            ++L++LP G LF++ + R
Sbjct: 1321 DRLRQLPEGSLFIKEVDR 1338


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 74  YKSPSAPVCVKA*LIQLLLSRAHIFLSI 157
           Y SP++ VC+ A LI L +    +++ I
Sbjct: 621 YISPASQVCIAAALIALQIVLTLVWMII 648


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 74  YKSPSAPVCVKA*LIQLLLSRAHIFLSI 157
           Y SP++ VC+ A LI L +    +++ I
Sbjct: 711 YISPASQVCIAAALIALQIVLTLVWMII 738


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,270
Number of Sequences: 438
Number of extensions: 3728
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)