Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0185
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 35 0.014
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 29 0.90
SPAC6B12.06c |||conserved fungal protein|Schizosaccharomyces pom... 27 2.7
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 27 3.6
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 26 4.8
SPAC688.02c |mis14||kinetochore protein Mis14 |Schizosaccharomyc... 26 6.3
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 26 6.3
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 25 8.4
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 25 8.4
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 34.7 bits (76), Expect = 0.014
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 549 ERAEWLNRILLQVWPNVNSYAKTLLXDLIEPAVAXSLANY 668
E AEW+N +L +VWP +N + + D IE + S+ ++
Sbjct: 230 ESAEWMNHLLEKVWPLINPEMFSSVADQIEDVMQASIPSF 269
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 28.7 bits (61), Expect = 0.90
Identities = 14/62 (22%), Positives = 27/62 (43%)
Frame = +3
Query: 543 DVERAEWLNRILLQVWPNVNSYAKTLLXDLIEPAVAXSLANYKLSGFKFERMILGTIAPR 722
D E WLN L Q W + ++ + ++ ++ ++ + LGT +PR
Sbjct: 217 DSETVTWLNTFLQQFWYIFEPSLSERITEITDQILSENVPSF-IDSMALSEFTLGTKSPR 275
Query: 723 VG 728
+G
Sbjct: 276 MG 277
>SPAC6B12.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 117
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 618 KSLRSCSHSARLVGVSCSTIRLVRRPGRIPM 526
KS SCS A+L GVS +IR + + P+
Sbjct: 64 KSSMSCSELAKLYGVSPESIRRILKSSNRPL 94
>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 26.6 bits (56), Expect = 3.6
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 559 SARSTSGKNTHE-GKSSSLASITSFSEDSAATFAMLRLYSFS 437
S S SG + H G SS +S TS SA+TF + R Y F+
Sbjct: 462 SYTSASGSSAHSSGSSSGSSSATS----SASTFNLSRFYVFA 499
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +3
Query: 429 WRKENEYKRNIAKVAALSSEKDVILARLDDLPSWVFFPDVERAEWLNRI 575
++ EY++ + + L S+ D+I ++DL S + D E +E L ++
Sbjct: 257 FKSTEEYEQQMITIRHLESQSDIINTTINDLKSQMTITD-ESSEDLEKL 304
>SPAC688.02c |mis14||kinetochore protein Mis14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 210
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +3
Query: 429 WRKEN--EYKRNIAKVAALSSEKDVILARLDDLP 524
+RKE+ Y++ IAKVA L ++ARL+ P
Sbjct: 177 FRKEDIDRYEQTIAKVAYLKKNLPRVVARLEKTP 210
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -1
Query: 514 SSLASITSFSEDSAATFAMLRLYSFSLRH 428
S A+I S DSA F RLY L+H
Sbjct: 723 SKTAAILGVSRDSAKVFNYGRLYGAGLKH 751
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 25.4 bits (53), Expect = 8.4
Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 14/138 (10%)
Frame = +3
Query: 309 MMYTFLKKVSIVGAVYLVGYMQWSVAWLIGPVILSVMRDQWRKENEYKR---NI------ 461
+M LK +V V VG + + A P+ + ++ DQ N Y NI
Sbjct: 1173 LMAQHLKHEDLVWVVPCVGDVVYPEAEEASPIEVKII-DQTYTINVYHHYLDNIKYVLLD 1231
Query: 462 AKVAALSSEKDVILARLDDLPSWVFFPDVER--AEWLNRILLQVWPNVNSYAKTLLXDLI 635
A V + K+ AR+DDL S +F+ + AE + R + ++ ++N Y L +
Sbjct: 1232 APVFRRQTSKEPYPARMDDLGSAIFYSAWNQCIAEVIRRNPIDIY-HINDYHGALAPCYL 1290
Query: 636 EPAV---AXSLANYKLSG 680
P + A SL N + G
Sbjct: 1291 LPDIIPCALSLHNAEFQG 1308
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 519 SRQVSLVSHLFQKTVQRPLRCCVCIRS 439
+R +L SH+ T RP +C +C +S
Sbjct: 582 TRAYNLKSHMNTHTNYRPFQCSICKKS 608
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,981,681
Number of Sequences: 5004
Number of extensions: 60370
Number of successful extensions: 181
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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