Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0185
         (730 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48082| Best HMM Match : No HMM Matches (HMM E-Value=.)             101   6e-22
SB_3986| Best HMM Match : C2 (HMM E-Value=2.9e-31)                     71   1e-12
SB_32476| Best HMM Match : Ion_trans (HMM E-Value=1.7e-36)             31   1.3  
SB_3985| Best HMM Match : C2 (HMM E-Value=0)                           30   1.7  
SB_2931| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.2  
SB_22002| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)               29   3.9  
SB_386| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)                 29   3.9  
SB_58127| Best HMM Match : DUF1605 (HMM E-Value=0.17)                  29   5.1  
SB_21384| Best HMM Match : 7tm_1 (HMM E-Value=8.6e-05)                 28   8.9  
SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_48173| Best HMM Match : WD40 (HMM E-Value=7.3e-18)                  28   8.9  
SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_48082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 665

 Score =  101 bits (242), Expect = 6e-22
 Identities = 46/144 (31%), Positives = 84/144 (58%), Gaps = 1/144 (0%)
 Frame = +3

Query: 300 VFSMMYTFLKKVSIVGAVYLVGYMQWSVAWLIGPVILSVMRDQWRKENEYK-RNIAKVAA 476
           + + +  +LK V +   ++ +G+M  S  W++  +++  M   W+   E K +  AK+  
Sbjct: 45  IVTFVLKYLKFVGVALGIWFMGWMGLSYVWVLCGLLVFTM---WKLNQEDKSKRRAKLQE 101

Query: 477 LSSEKDVILARLDDLPSWVFFPDVERAEWLNRILLQVWPNVNSYAKTLLXDLIEPAVAXS 656
           +      I+A++DDLP+WVFFPDVERAEWLN++++Q+WP +N     ++ + +EP +  +
Sbjct: 102 VMKTDSEIVAKMDDLPAWVFFPDVERAEWLNKMIVQLWPFINDMVVKIMKETVEPEIQKN 161

Query: 657 LANYKLSGFKFERMILGTIAPRVG 728
           +  + L    F  + LG   PR+G
Sbjct: 162 VPGF-LKSIHFAEISLGNQPPRIG 184


>SB_3986| Best HMM Match : C2 (HMM E-Value=2.9e-31)
          Length = 778

 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 44/135 (32%), Positives = 64/135 (47%)
 Frame = +3

Query: 303 FSMMYTFLKKVSIVGAVYLVGYMQWSVAWLIGPVILSVMRDQWRKENEYKRNIAKVAALS 482
           FS  +TFL    +    +  G +  S AWL+  + +             KR I +V  + 
Sbjct: 16  FSHFFTFLGWFVLAWIAWAFGALHLSFAWLVLFLFIGAFLQSGHLLKSNKRKIHRV--IK 73

Query: 483 SEKDVILARLDDLPSWVFFPDVERAEWLNRILLQVWPNVNSYAKTLLXDLIEPAVAXSLA 662
            E DV      ++PSW++F + E A WLNRIL Q+WP V    + +L   +EPA+  S  
Sbjct: 74  QENDVKKV-WPNMPSWIYFSEEEHALWLNRILDQMWPYVEDMVQGILKHSVEPAI-QSYL 131

Query: 663 NYKLSGFKFERMILG 707
              L    FE+M LG
Sbjct: 132 PAPLQSLCFEKMALG 146


>SB_32476| Best HMM Match : Ion_trans (HMM E-Value=1.7e-36)
          Length = 454

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/38 (34%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
 Frame = +1

Query: 16  TLKGRIIISLLNLQAIKIVS--TVLCITNYEKILSTEC 123
           T  G+I+ S+L++  + +V+    L ++N++K+LST+C
Sbjct: 343 TASGKIVGSILSVFGVLVVALPVFLFVSNFKKVLSTKC 380


>SB_3985| Best HMM Match : C2 (HMM E-Value=0)
          Length = 835

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/52 (32%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
 Frame = +3

Query: 348 AVYLVGYMQWSVAWLIGPVILSV-MRDQWRKENEYKRNIAKVAALSSEKDVI 500
           A++LVGYM +S AW++  +++ V  + +  K+ +++ N+ + A +SS  D I
Sbjct: 117 ALWLVGYMHFSFAWIVMILMIFVSWQFEIEKKTKHRENMVQ-AHMSSYIDKI 167


>SB_2931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = -1

Query: 547 TSGKNTHEGKSSSLASITSFSEDSAATFAMLRLYSFSLRH*SRITDNITGPIS 389
           TS  N  EG       ++SFSED    + M R  +F      R+   +TG  S
Sbjct: 93  TSRTNEEEGVEKMQLLVSSFSEDQLNRYEMYRRAAFPKAAIKRLMQGVTGGTS 145


>SB_22002| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)
          Length = 431

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 531 PMKASRQVSLVSHLFQKTVQRPLRCCVCIRS 439
           P + SR   L  H+   T Q+P +C +C+R+
Sbjct: 311 PRRFSRSDELTRHMRTHTGQKPFQCRICMRN 341


>SB_386| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)
          Length = 669

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 531 PMKASRQVSLVSHLFQKTVQRPLRCCVCIRS 439
           P + SR   L  H+   T Q+P +C +C+R+
Sbjct: 549 PRRFSRSDELTRHMRTHTGQKPFQCRICMRN 579


>SB_58127| Best HMM Match : DUF1605 (HMM E-Value=0.17)
          Length = 231

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -3

Query: 491 FFRRQCSDLCDVAFVFVLLAPLIAHHRQYNGPNKPRNAPLHIT 363
           F+RR   D CD AF+ + +  + A   +     KP  A   I+
Sbjct: 160 FYRRFYQDFCDTAFIEIYIGVVTAQSMEKKHFKKPLKASFEIS 202


>SB_21384| Best HMM Match : 7tm_1 (HMM E-Value=8.6e-05)
          Length = 442

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 359 SRLYAMERCVAYWARYIVGDARSMAQGERIQTQHRKGRC 475
           +R Y M        RYIVG+ +S++Q  RI     K RC
Sbjct: 339 NRRYFMRESDINPERYIVGNNKSISQSPRILVPAAKPRC 377


>SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1040

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 270 RQFCLHLPCYYHWPCCTKLLRRCRCFRD 187
           RQFC+H+P         K L RC CFR+
Sbjct: 854 RQFCIHIP--------GKYLTRCECFRN 873


>SB_48173| Best HMM Match : WD40 (HMM E-Value=7.3e-18)
          Length = 659

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 8/27 (29%), Positives = 20/27 (74%)
 Frame = +3

Query: 387 WLIGPVILSVMRDQWRKENEYKRNIAK 467
           W + P +L+ +++Q++KE + K+N+ +
Sbjct: 247 WDVDPSMLAKLKEQYKKERKSKKNVKR 273


>SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4275

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = +3

Query: 432  RKENEYKRNIAKVAALSSEKDVILARL-DDLPSWVFFPDVERAEWLNRILLQVWPNVNSY 608
            R +   ++++  +  L + +D+  + L  D+ +  F P  + +E L+++    W NVN  
Sbjct: 3494 RTDATSRKSLTLIKHLFNREDITTSPLLADIKNTKFVPPHKVSEALSQLCPPFWSNVNGG 3553

Query: 609  AKTLLXDLIEPAVAXSLAN 665
             K +L    +P V   +A+
Sbjct: 3554 IKQMLGIYEKPPVEVVVAH 3572


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,578,120
Number of Sequences: 59808
Number of extensions: 486104
Number of successful extensions: 1444
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1433
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)