Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0185
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13019-3|AAC24452.2|  713|Caenorhabditis elegans Hypothetical pr...   102   3e-22
U09277-1|AAC13764.1|  532|Caenorhabditis elegans UNC-17 protein.       30   1.5  
L19621-1|AAC14456.1|  532|Caenorhabditis elegans acetylcholine t...    30   1.5  
AF036701-4|AAB88371.1|  532|Caenorhabditis elegans Uncoordinated...    30   1.5  
AL021493-2|CAA16393.1|  382|Caenorhabditis elegans Hypothetical ...    29   3.4  
U64846-7|AAG24116.2|  327|Caenorhabditis elegans Serpentine rece...    29   4.5  
U64846-3|AAG24114.1|  327|Caenorhabditis elegans Serpentine rece...    29   4.5  
Z73098-2|CAA97331.2| 1058|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    28   7.9  
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    28   7.9  
AC006680-8|AAK72298.1|  355|Caenorhabditis elegans Serpentine re...    28   7.9  

>U13019-3|AAC24452.2|  713|Caenorhabditis elegans Hypothetical
           protein T12A2.15a protein.
          Length = 713

 Score =  102 bits (244), Expect = 3e-22
 Identities = 52/126 (41%), Positives = 73/126 (57%), Gaps = 1/126 (0%)
 Frame = +3

Query: 354 YLVGYMQWSVAWLIGPVILSVMRDQ-WRKENEYKRNIAKVAALSSEKDVILARLDDLPSW 530
           + +G   +S  W++  +I SV +   WRK    +R IA  A    E++VI+A+L DLP+W
Sbjct: 21  FFLGKWDYSFVWVLIIIIASVTKSYLWRKRE--RRLIALRATALREREVIMAQLQDLPAW 78

Query: 531 VFFPDVERAEWLNRILLQVWPNVNSYAKTLLXDLIEPAVAXSLANYKLSGFKFERMILGT 710
           V FPD ER EWLN+++ Q+WP V  Y KT + D I P V   +       FKF +M +G 
Sbjct: 79  VQFPDTERVEWLNKVIHQLWPYVGEYTKTFMNDFIIPQVKAQMPG-MFKNFKFTKMDMGD 137

Query: 711 IAPRVG 728
           I  RVG
Sbjct: 138 IPCRVG 143


>U09277-1|AAC13764.1|  532|Caenorhabditis elegans UNC-17 protein.
          Length = 532

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 327 KKVSIVGAVYLVGYMQWSVAWLIGPVILSVMRDQW 431
           + VS+ G+VY +  + +S+A+  GP+I   +   W
Sbjct: 391 RHVSVYGSVYAIADISYSLAYAFGPIIAGWIVTNW 425


>L19621-1|AAC14456.1|  532|Caenorhabditis elegans acetylcholine
           transporter protein.
          Length = 532

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 327 KKVSIVGAVYLVGYMQWSVAWLIGPVILSVMRDQW 431
           + VS+ G+VY +  + +S+A+  GP+I   +   W
Sbjct: 391 RHVSVYGSVYAIADISYSLAYAFGPIIAGWIVTNW 425


>AF036701-4|AAB88371.1|  532|Caenorhabditis elegans Uncoordinated
           protein 17, isoform a protein.
          Length = 532

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 327 KKVSIVGAVYLVGYMQWSVAWLIGPVILSVMRDQW 431
           + VS+ G+VY +  + +S+A+  GP+I   +   W
Sbjct: 391 RHVSVYGSVYAIADISYSLAYAFGPIIAGWIVTNW 425


>AL021493-2|CAA16393.1|  382|Caenorhabditis elegans Hypothetical
           protein Y51A2B.2 protein.
          Length = 382

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/44 (36%), Positives = 27/44 (61%)
 Frame = +1

Query: 10  TKTLKGRIIISLLNLQAIKIVSTVLCITNYEKILSTECND*NWL 141
           +K LK ++++ L + QA    S VL ITN++ +L    +D NW+
Sbjct: 20  SKNLKIQLVLLLEHFQA----SYVLIITNFQLLLEISGSDKNWI 59


>U64846-7|AAG24116.2|  327|Caenorhabditis elegans Serpentine
           receptor, class t protein37 protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -3

Query: 254 TCHVIITGHAALNYCGVAGVFVIKTYSEQIRKLF 153
           TC VI+ GHA   +   A VF+    +EQIRK F
Sbjct: 270 TC-VILIGHALWQFVQGAPVFIYIGLNEQIRKRF 302


>U64846-3|AAG24114.1|  327|Caenorhabditis elegans Serpentine
           receptor, class t protein36 protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -3

Query: 254 TCHVIITGHAALNYCGVAGVFVIKTYSEQIRKLF 153
           TC VI+ GHA   +   A VF+    +EQIRK F
Sbjct: 270 TC-VILIGHALWQFVQGAPVFIYIGLNEQIRKRF 302


>Z73098-2|CAA97331.2| 1058|Caenorhabditis elegans Hypothetical
           protein T21C9.2 protein.
          Length = 1058

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 548 RTSRMVEQDTPTSLAECEQLRKDFIEXPDRTG 643
           + + + E  TPT L+EC +L K+F    D+ G
Sbjct: 680 KNASVTEATTPTQLSECIKLVKEFQSKCDKEG 711


>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
            ATPase protein.
          Length = 2395

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 420  RDQWRKENEYKRNIAKVAALSSEKDVILARLDDLPSWVFFPDVERAEW 563
            + Q +K ++ KRN  + A   + ++ +       PSW   PD + AEW
Sbjct: 1665 QQQQQKSSKKKRNDNRTAQNRTAENGVKRATTPPPSWREEPDYDGAEW 1712


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
            protein Y111B2A.22 protein.
          Length = 2395

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 420  RDQWRKENEYKRNIAKVAALSSEKDVILARLDDLPSWVFFPDVERAEW 563
            + Q +K ++ KRN  + A   + ++ +       PSW   PD + AEW
Sbjct: 1665 QQQQQKSSKKKRNDNRTAQNRTAENGVKRATTPPPSWREEPDYDGAEW 1712


>AC006680-8|AAK72298.1|  355|Caenorhabditis elegans Serpentine
           receptor, class t protein6 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +3

Query: 294 NSVFSMMYTFLKKVSIVGAVYLVGYMQWSVAWLIGPVILSVMRDQW 431
           N  F + + F KKV       LVGY  WS+ +   PV+ SV    W
Sbjct: 138 NPNFPLEFVFRKKVFYFVLGALVGYSFWSLLF-TKPVLFSVEYSCW 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,646,487
Number of Sequences: 27780
Number of extensions: 351312
Number of successful extensions: 899
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)