Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0184
(800 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 29 0.77
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 29 1.0
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp... 27 2.3
SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr 1|||... 27 2.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 3.1
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb... 26 5.4
SPAC222.04c |ies6||chromatin remodeling complex subunit Ies6 |Sc... 26 5.4
SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation... 26 7.2
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 26 7.2
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 29.1 bits (62), Expect = 0.77
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +2
Query: 299 CVKSER-ACRPACRCQHALCRNRRAAPASDSDDKENNPSSTEISLDTTPPSYFDKRNHLD 475
C K R ACR C C C DSD + N ++ LDT P Y K+ ++
Sbjct: 285 CKKLARNACRTPC-CDKLFCEECIQTALLDSDFECPNCHRKDVLLDTLNPDY-QKQREIE 342
Query: 476 A 478
A
Sbjct: 343 A 343
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 28.7 bits (61), Expect = 1.0
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +1
Query: 7 RTTYSPCSNRKSLSNVYSSCWSTPSRELQNQSEKGYQARYEEVKEAHDRLAVE-FDNSKA 183
R +++ KSL+ + S R+ ++QSE + AR E+ K HD L E + +
Sbjct: 473 RKSHASQMRMKSLATLASE-QPIQKRKRKDQSEDNFGARDEDWKVYHDVLTAEQLEEERK 531
Query: 184 EFERQLMNVKKQ 219
+ Q+ +++KQ
Sbjct: 532 KLLDQIYSLEKQ 543
>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/57 (22%), Positives = 30/57 (52%)
Frame = +1
Query: 52 VYSSCWSTPSRELQNQSEKGYQARYEEVKEAHDRLAVEFDNSKAEFERQLMNVKKQS 222
+Y STP L SEK Y+ ++ + + +++ DN++ +F ++ N+ ++
Sbjct: 228 LYGRVESTPPAFLPETSEKQYKRKFSFTEPSSEKV----DNTETKFSKKTKNINDEN 280
>SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 235
Score = 27.5 bits (58), Expect = 2.3
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = +1
Query: 40 SLSNVYSSCWSTPSRELQNQSEKGYQARYEEVKEAHDRLAVEFDNSKAEFERQLMNVKKQ 219
SLS S REL +K R +E ++ H +L +FD KA R + K +
Sbjct: 49 SLSRSIDDYDSMVQRELVPAKKKKATIRIQEFRQKHVQLLEKFDELKAHV-RDIAQAKNR 107
Query: 220 SE 225
E
Sbjct: 108 KE 109
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 356 RNRRAAPASDSDDKENNPSSTEISLDT 436
RN+R P DSDDK++ S + SL+T
Sbjct: 1271 RNKRELP-EDSDDKQDTASKDKNSLET 1296
>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 710
Score = 26.2 bits (55), Expect = 5.4
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Frame = +2
Query: 341 QHALCRNRRAAPASDSDDKENNP--SSTEI--SLDTTPPSY-FDKRNHLDATFVKKKKSY 505
+ A N+ S SD ++P S T + S+D P Y F RN D+TF K Y
Sbjct: 600 EKATSYNKSIKDMSSSDMAFSDPAYSGTTLRSSVDLNTPEYPFSNRNDSDSTFTNNK--Y 657
Query: 506 FFPHD 520
P D
Sbjct: 658 VSPWD 662
>SPAC222.04c |ies6||chromatin remodeling complex subunit Ies6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = +2
Query: 356 RNRRAAPASDSDDKENNPSSTEISLDTTPPSYFDKRNHLDAT 481
RNR +D +N PS S PPS + + D T
Sbjct: 30 RNRNLRQIIQNDPVQNEPSKFSYSSIEAPPSVLPQPKYCDVT 71
>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
1|||Manual
Length = 321
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 368 AAPASDSDDKENNPSSTEISLDTTPPSYFDKRNHLDATFVKKKKS 502
+A A+D DD E S+ +++ T D+ + ++ KKKKS
Sbjct: 46 SAGATDEDDSERKSSAKDLTTPVT-EGEVDELKDMFSSMKKKKKS 89
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 28 SNRKSLSNVYSSCWSTPSRELQNQSEKGYQARYEEVKE 141
S+ SL + S TP+ +LQN+S+ + +VKE
Sbjct: 580 SDSLSLLTLLKSGLPTPANDLQNKSQNNERKASSQVKE 617
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,244,418
Number of Sequences: 5004
Number of extensions: 35424
Number of successful extensions: 140
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -