Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0184
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230... 35 0.066
05_04_0166 + 18664609-18664890 33 0.26
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936... 32 0.61
03_05_0435 - 24259864-24260206,24260302-24260467,24261175-242612... 31 0.81
01_05_0490 + 22672241-22674679 31 0.81
08_02_0349 - 16077063-16077824,16077891-16078102,16078142-160782... 31 1.1
02_03_0306 - 17540258-17540610,17544063-17544128,17544266-175443... 31 1.1
05_06_0026 - 25024807-25025300,25025432-25025495,25025567-250256... 31 1.4
07_01_0547 + 4052618-4052659,4055575-4055741,4055839-4056556,405... 30 1.9
05_07_0298 + 29072111-29072169,29072281-29072518,29072660-290727... 30 2.5
02_02_0421 - 10042184-10042197,10042442-10042822,10044158-100442... 29 3.3
06_02_0208 - 13026296-13026654,13027394-13027497,13028109-130282... 29 4.3
08_02_0444 - 17209447-17209491,17210559-17210849,17211655-172116... 29 5.7
11_06_0632 + 25674807-25675477,25676472-25677861,25677948-256780... 28 9.9
03_06_0768 - 36132733-36133035 28 9.9
>03_02_0752 -
10922456-10922644,10922719-10922796,10922888-10923016,
10923105-10923152,10923243-10923333,10923517-10923648,
10923869-10924086,10925121-10925271,10925360-10926009,
10926715-10926786,10926938-10926985,10927105-10927242,
10927750-10927756,10928064-10928212
Length = 699
Score = 35.1 bits (77), Expect = 0.066
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 257 AARQRGSCATKMCGCVKSERACRPACRCQHALCRNRR 367
A + G+C K CGC KS + C C + CR+R+
Sbjct: 465 ACVENGTCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQ 501
>05_04_0166 + 18664609-18664890
Length = 93
Score = 33.1 bits (72), Expect = 0.26
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +2
Query: 239 RYWRCSAARQRGSCATKMCGCVKSERACRPACRCQHALCRNRRAAP 376
R WRCSAA QR C M + E A + C + AAP
Sbjct: 42 RQWRCSAAHQRRRCDKGMWSWRRGEVAVEAEVGVRTVACEDATAAP 87
>06_01_1133 +
9364842-9364850,9364929-9365048,9365157-9365476,
9366267-9366428,9367151-9367235,9367352-9367501,
9367588-9367635,9367705-9367773,9367897-9368600,
9369426-9369561,9369636-9369856,9370355-9370486,
9371316-9371406,9371878-9371925,9372004-9372132,
9372357-9372626
Length = 897
Score = 31.9 bits (69), Expect = 0.61
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 272 GSCATKMCGCVKSERACRPACRCQHALCRNRR 367
G+C K CGC K + C C + CR+R+
Sbjct: 667 GTCCEKYCGCPKMCKNRFRGCHCAKSQCRSRQ 698
>03_05_0435 -
24259864-24260206,24260302-24260467,24261175-24261241,
24261553-24261648,24261718-24261898,24262252-24262323,
24262393-24262505,24262596-24262817,24263262-24263910,
24264118-24264206,24265932-24266015,24266219-24266358,
24266522-24266573
Length = 757
Score = 31.5 bits (68), Expect = 0.81
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 266 QRGSCATKMCGCVKSERACRPACRCQHALCRN 361
+R C K C C +S C +CRC++ C+N
Sbjct: 553 KRSYCVKKYCECFQSGVGCSMSCRCEN--CKN 582
>01_05_0490 + 22672241-22674679
Length = 812
Score = 31.5 bits (68), Expect = 0.81
Identities = 15/56 (26%), Positives = 32/56 (57%)
Frame = +2
Query: 335 RCQHALCRNRRAAPASDSDDKENNPSSTEISLDTTPPSYFDKRNHLDATFVKKKKS 502
R +H + + AAPA+++ +E + + SL+T+ + + NH +T +++ KS
Sbjct: 138 RREHQVSPSLAAAPAAEAVGEEPSTAEVWASLNTSAAASYGGNNHYGSTGIRRLKS 193
>08_02_0349 -
16077063-16077824,16077891-16078102,16078142-16078204,
16078439-16078865,16078870-16078919,16079006-16079360
Length = 622
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 356 RNRRAAPASDSDDKENNPSSTEISLDTTPPSYFDKR 463
R + AP+SDS DKE P T PP Y+D R
Sbjct: 302 RTAKEAPSSDSADKEVQPEK------TVPPEYYDTR 331
>02_03_0306 -
17540258-17540610,17544063-17544128,17544266-17544397,
17544530-17544685,17545216-17545375
Length = 288
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = +1
Query: 76 PSRELQNQSEKGYQARYEEVKEAHDRLAVEFDNSKAEFERQLMNVKKQSEQ 228
P E +Q+E+G + E+++E H +A +FD + +F+ M V+++ Q
Sbjct: 53 PDEEQSHQAEEGEEHDQEQIQEYHVTIAHDFDLNMHDFDLN-MQVEEEDYQ 102
>05_06_0026 -
25024807-25025300,25025432-25025495,25025567-25025662,
25025719-25025929,25026616-25026690,25026820-25027037
Length = 385
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 266 QRGSCATKMCGCVKSERACRPACRCQHALCRN 361
++ SC K C C + C CRC+ CRN
Sbjct: 187 KKSSCLKKYCDCYQDGTGCSLFCRCED--CRN 216
>07_01_0547 +
4052618-4052659,4055575-4055741,4055839-4056556,
4056678-4057114,4057241-4057315,4057490-4057673,
4057759-4057854,4057952-4058018,4058556-4058715,
4058808-4059199,4059254-4059300
Length = 794
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +2
Query: 266 QRGSCATKMCGCVKSERACRPACRCQHALCRN----RRAAPASDSDDKENNPSSTE 421
++ SC K C C + C CRC+ C+N R AA ++++++ + E
Sbjct: 560 KKSSCLKKYCECYQGGVGCSSNCRCEG--CKNTFGKRDAAVSTEAEEMKQGGEEAE 613
>05_07_0298 +
29072111-29072169,29072281-29072518,29072660-29072740,
29072831-29072897,29073055-29073191,29073319-29073321
Length = 194
Score = 29.9 bits (64), Expect = 2.5
Identities = 21/80 (26%), Positives = 32/80 (40%)
Frame = +2
Query: 158 PSSSTIARRNSKGS**MSRNRANKS*RRYWRCSAARQRGSCATKMCGCVKSERACRPACR 337
P SST A + K + N+ + CS + + C+ C C K+ C C+
Sbjct: 81 PQSSTSAISDPKNT--SDAMPGNEQRKHAKGCSCRKSK--CSKLYCECFKNSVGCTAKCK 136
Query: 338 CQHALCRNRRAAPASDSDDK 397
C C N S+S +K
Sbjct: 137 CLE--CSNSFGVKNSESSNK 154
>02_02_0421 -
10042184-10042197,10042442-10042822,10044158-10044261,
10044634-10044734,10044806-10045147,10045981-10046158,
10047696-10047776,10049190-10049449
Length = 486
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 266 QRGSCATKMCGCVKSERACRPACRCQHALCRN 361
++ C K C C ++ C CRCQ C+N
Sbjct: 192 RKSECLKKYCECFQANILCSKNCRCQD--CKN 221
>06_02_0208 -
13026296-13026654,13027394-13027497,13028109-13028200,
13028418-13028774,13029932-13030109,13030454-13030507,
13030701-13030784,13031521-13031714
Length = 473
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Frame = +2
Query: 266 QRGSCATKMCGCVKSERACRPACRCQHALCRN-------RRAAPASDSDDKENNPSSTEI 424
++ C K C C ++ C C+CQ C+N R +S D+ N + +
Sbjct: 189 KKSGCLKKYCECFQANILCSKNCKCQD--CKNFEGSEELRLITQGDNSSDRNNIQHAANV 246
Query: 425 SLD 433
+L+
Sbjct: 247 ALN 249
>08_02_0444 -
17209447-17209491,17210559-17210849,17211655-17211672,
17211798-17211969,17212523-17212630,17212940-17213382
Length = 358
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 266 QRGSCATKMCGCVKSERACRPACRCQHALCRNRRA 370
+R C K C C K+ C CRC C+N ++
Sbjct: 266 KRTECLKKYCECFKASVFCSENCRCTG--CKNYKS 298
>11_06_0632 +
25674807-25675477,25676472-25677861,25677948-25678083,
25678185-25678282,25678470-25678535,25678699-25678827,
25679570-25679746,25680576-25680614
Length = 901
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1
Query: 82 RELQNQSEKGYQARYEEVKEAHDRLAVEFDNSKAEFE 192
REL+ Q E+ QA KEA +R + E +KAE E
Sbjct: 529 RELEQQKERERQAMERATKEARERASAE-ARAKAERE 564
>03_06_0768 - 36132733-36133035
Length = 100
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Frame = +2
Query: 245 WRCSAARQRGSCATK-MCGC----VKSERACRPACRCQHALCRNRRAAPASDSDDKENNP 409
W A RG+C + + GC + +C AC + + A P S +D + +P
Sbjct: 19 WALLATAARGNCRDECLAGCQGWAIICHLSCNSACLGEVGISAMSTATPQSITDQDQQHP 78
Query: 410 SSTE 421
S +
Sbjct: 79 SQQQ 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,602,595
Number of Sequences: 37544
Number of extensions: 232375
Number of successful extensions: 928
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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