Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0184
(800 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22850| Best HMM Match : CXC (HMM E-Value=0.22) 37 0.022
SB_52343| Best HMM Match : OTU (HMM E-Value=0.0036) 34 0.15
SB_19629| Best HMM Match : CXC (HMM E-Value=0.1) 33 0.36
SB_23426| Best HMM Match : NHL (HMM E-Value=1.1e-19) 32 0.62
SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.62
SB_59534| Best HMM Match : AA_permease (HMM E-Value=3.1e-05) 31 0.82
SB_34002| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15) 31 1.1
SB_11735| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_30297| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_34845| Best HMM Match : CXC (HMM E-Value=0.03) 30 1.9
SB_25367| Best HMM Match : TPR_1 (HMM E-Value=2.4e-40) 30 1.9
SB_13856| Best HMM Match : CXC (HMM E-Value=0.021) 30 1.9
SB_2462| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3) 29 3.3
SB_23887| Best HMM Match : Pre-SET (HMM E-Value=0.05) 29 3.3
SB_21917| Best HMM Match : CXC (HMM E-Value=0.22) 29 3.3
SB_24314| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8
SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14) 29 5.8
SB_37903| Best HMM Match : Pre-SET (HMM E-Value=0.11) 28 7.7
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_2690| Best HMM Match : Pre-SET (HMM E-Value=0.11) 28 7.7
SB_44608| Best HMM Match : Pre-SET (HMM E-Value=2.9) 28 7.7
SB_40180| Best HMM Match : Pre-SET (HMM E-Value=0.11) 28 7.7
SB_35556| Best HMM Match : Pre-SET (HMM E-Value=2.9) 28 7.7
SB_10195| Best HMM Match : CXC (HMM E-Value=0.003) 28 7.7
>SB_22850| Best HMM Match : CXC (HMM E-Value=0.22)
Length = 418
Score = 36.7 bits (81), Expect = 0.022
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 272 GSCATKMCGCVKSERACRPAC-RCQHALCRNRRAAPASDSDD 394
G C T++C C K+ C PAC +C+ C N + DD
Sbjct: 372 GHCETRLCTCFKNGLQCTPACGQCKGIACLNSPEVDREEFDD 413
>SB_52343| Best HMM Match : OTU (HMM E-Value=0.0036)
Length = 1014
Score = 33.9 bits (74), Expect = 0.15
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Frame = +2
Query: 248 RCSAARQRGS----CAT---KMCGCVKSERACRPACRCQHALCRNRRAA 373
+C+ + GS CA C C K+ C P CRC LC N+ A
Sbjct: 788 KCNCGKNAGSNSPVCAVGELSHCPCAKAGLKCLPFCRCSKLLCSNKAQA 836
>SB_19629| Best HMM Match : CXC (HMM E-Value=0.1)
Length = 491
Score = 32.7 bits (71), Expect = 0.36
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 275 SCATKMCGCVKSERACRPACRCQHALCRNRRAAPASDSDDKENNPSSTE 421
+C+T C CV S C C+ + C NR D +++EN+P+ +
Sbjct: 438 TCSTPKCTCVSSGLKCTDMCKLLN--CENR---TPEDEEEEENDPADNQ 481
>SB_23426| Best HMM Match : NHL (HMM E-Value=1.1e-19)
Length = 566
Score = 31.9 bits (69), Expect = 0.62
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +1
Query: 94 NQSEKGYQARYEEVKEAHDRLAVEFDNSKAEFERQLMNVKKQSE 225
N S+K Q+R +K D LA + + KAEFE++L KK E
Sbjct: 132 NASKKELQSRITTLK---DELAKDMNKEKAEFEKRLKETKKVRE 172
>SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 710
Score = 31.9 bits (69), Expect = 0.62
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +1
Query: 94 NQSEKGYQARYEEVKEAHDRLAVEFDNSKAEFERQLMNVKKQSE 225
N S+K Q+R +K D LA + + KAEFE++L KK E
Sbjct: 241 NASKKELQSRITTLK---DELAKDMNKEKAEFEKRLKETKKVRE 281
>SB_59534| Best HMM Match : AA_permease (HMM E-Value=3.1e-05)
Length = 889
Score = 31.5 bits (68), Expect = 0.82
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 85 ELQNQSEKGY-QARYEEVKEAHDRLAVEFDNSKAEFERQLMNVKKQ 219
E Q Q+E+ QAR +VK LAV+ +AEFER L K+Q
Sbjct: 426 EKQKQTEEMLRQARENQVKNKEHFLAVQAKRDRAEFERVLRVQKEQ 471
>SB_34002| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 563
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +1
Query: 7 RTTYSPCSNRKSLSNVYSSCWSTPSRELQNQSEKGYQARYEE 132
R+ ++ NR + NV S C + S +L+ +E+G +A Y +
Sbjct: 369 RSYFTERKNRTKIGNVTSGCEESDSNKLERVNERGLRAVYND 410
>SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)
Length = 594
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +1
Query: 46 SNVYSSCWSTPSRELQNQSEKGYQARYEEVKEAHDRLAVEFDNSKAEFERQLMNVKKQSE 225
+N+ S SREL + GY YE +++D V +N F +L ++ SE
Sbjct: 410 ANLSVSWLPDQSRELVHGIFAGYHVTYENTADSNDSGIVMLENGMVSFVLELTGLRTYSE 469
Query: 226 QK 231
K
Sbjct: 470 YK 471
>SB_11735| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 339
Score = 30.7 bits (66), Expect = 1.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 272 GSCATKMCGCVKSERACRPAC 334
G C T++C C K+ C PAC
Sbjct: 287 GHCETRLCTCFKNGLQCTPAC 307
>SB_30297| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +2
Query: 248 RCSAARQRGSCATKMCGCVKSERACRPACRC--QHALCRNRRAAPASDSDDKENN 406
+C A+ R C T C C KS C C C C+N+ + +++E++
Sbjct: 311 KCKCAKDR--CVTNRCQCKKSGLKCTNLCGCSANGEDCQNKSGNNDEEDEEEESD 363
>SB_34845| Best HMM Match : CXC (HMM E-Value=0.03)
Length = 1397
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/62 (25%), Positives = 25/62 (40%)
Frame = +2
Query: 248 RCSAARQRGSCATKMCGCVKSERACRPACRCQHALCRNRRAAPASDSDDKENNPSSTEIS 427
+C A+ + C T C C KS C C C S ++D+E+N ++
Sbjct: 395 KCKCAKDK--CVTNRCQCKKSGLKCTDLCGCS---ANGEDCQNKSGNNDEEDNEEESDYD 449
Query: 428 LD 433
D
Sbjct: 450 DD 451
>SB_25367| Best HMM Match : TPR_1 (HMM E-Value=2.4e-40)
Length = 553
Score = 30.3 bits (65), Expect = 1.9
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Frame = +2
Query: 254 SAARQRGSCATKMCGCVKSERACR-PACRCQHALCRNRRA------APASDSDDKENNPS 412
S QR S A K GC+++ ACR A +C HA C+ + A D +DK+ P
Sbjct: 56 SGQYQRASHALKRRGCLETSLACRYLAAKC-HAECKQWQEALDTLDAMPKDLEDKDVFPM 114
Query: 413 STEISLDT 436
S +S T
Sbjct: 115 SEGVSGST 122
>SB_13856| Best HMM Match : CXC (HMM E-Value=0.021)
Length = 464
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/62 (25%), Positives = 25/62 (40%)
Frame = +2
Query: 248 RCSAARQRGSCATKMCGCVKSERACRPACRCQHALCRNRRAAPASDSDDKENNPSSTEIS 427
+C A+ + C T C C KS C C C S ++D+E+N ++
Sbjct: 267 KCKCAKDK--CVTNRCQCKKSGLRCTDLCGCS---ANGEDCQNKSGNNDEEDNEEESDYD 321
Query: 428 LD 433
D
Sbjct: 322 DD 323
>SB_2462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 571
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +2
Query: 278 CATKMCGCVKSERACRPAC-RCQHALCRNRRAAPASDSD 391
C+++ C C + + C AC C+ C N S+SD
Sbjct: 533 CSSRKCSCKRHDLDCTAACGTCRRQSCDNSAPPDLSESD 571
>SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3)
Length = 1353
Score = 29.5 bits (63), Expect = 3.3
Identities = 27/103 (26%), Positives = 43/103 (41%)
Frame = +2
Query: 236 RRYWRCSAARQRGSCATKMCGCVKSERACRPACRCQHALCRNRRAAPASDSDDKENNPSS 415
R+ R S AR R A++ KS+ + R + A + + + P D D + P
Sbjct: 199 RQASRKSKARPRQ--ASRKSKASKSKDQGKQGARPRQASSKTKTSKP-EDQDKQAARPRQ 255
Query: 416 TEISLDTTPPSYFDKRNHLDATFVKKKKSYFFPHDQANXDHRP 544
T + T+ P Y DK+ +K K+ P DQ +P
Sbjct: 256 TSRKIKTSKPQYQDKQAARPRQASRKSKT-SKPQDQDKQAAKP 297
>SB_23887| Best HMM Match : Pre-SET (HMM E-Value=0.05)
Length = 922
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +2
Query: 278 CATKMCGCVKSERACRPAC-RCQHALCRNRRAAPASDSD 391
C+++ C C + + C AC C+ C N S+SD
Sbjct: 884 CSSRKCSCKRHDLDCTAACGTCRGQSCDNSAPPDLSESD 922
>SB_21917| Best HMM Match : CXC (HMM E-Value=0.22)
Length = 470
Score = 29.5 bits (63), Expect = 3.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 272 GSCATKMCGCVKSERACRPAC 334
G C T+ C C K+ C PAC
Sbjct: 418 GHCETRSCTCFKNGLQCTPAC 438
>SB_24314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +2
Query: 248 RCSAARQRGSCATKMCGCVKSERACRPACRC 340
RC A+ R C + C C KS C C C
Sbjct: 396 RCGCAKDR--CINQRCKCRKSGLGCTDLCSC 424
>SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)
Length = 1774
Score = 28.7 bits (61), Expect = 5.8
Identities = 22/78 (28%), Positives = 36/78 (46%)
Frame = +2
Query: 209 SRNRANKS*RRYWRCSAARQRGSCATKMCGCVKSERACRPACRCQHALCRNRRAAPASDS 388
++ R + R C+ +R S +MC V+S R C P Q A+ +++ D
Sbjct: 1347 AKKREERHRLRSSSCNEREERES-PCEMCAPVQSPRVCTPL--TQPAITHTQQSGDVIDL 1403
Query: 389 DDKENNPSSTEISLDTTP 442
EN+ S E S ++TP
Sbjct: 1404 --TENDSSRDESSRESTP 1419
>SB_37903| Best HMM Match : Pre-SET (HMM E-Value=0.11)
Length = 220
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +2
Query: 278 CATKMCGCVKSERACRPAC-RCQHALCRNRRAAPASDSD 391
C+++ C C + + C AC C+ C N S SD
Sbjct: 182 CSSRKCSCKRHDLDCTAACGTCRGQSCDNSSPPDLSKSD 220
>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2848
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +1
Query: 106 KGYQARYEEVKEAHDR---LAVEFDNSKAEFERQLMNVKKQSEQ 228
K Y+ R +E + + R L EFD + E+Q+ N ++Q E+
Sbjct: 2557 KSYKRRLKEYETSESRIPKLRTEFDRERELLEQQINNYRRQIEE 2600
>SB_2690| Best HMM Match : Pre-SET (HMM E-Value=0.11)
Length = 715
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +2
Query: 278 CATKMCGCVKSERACRPAC-RCQHALCRNRRAAPASDSD 391
C+++ C C + + C AC C+ C N S SD
Sbjct: 677 CSSRKCSCKRHDLDCTAACGTCRGQSCDNSSPPDLSKSD 715
>SB_44608| Best HMM Match : Pre-SET (HMM E-Value=2.9)
Length = 91
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +2
Query: 278 CATKMCGCVKSERACRPAC-RCQHALCRNRRAAPASDSD 391
C+++ C C + + C AC C+ C N S SD
Sbjct: 53 CSSRKCSCKRHDLDCTAACGTCRGQSCDNSSPPDLSKSD 91
>SB_40180| Best HMM Match : Pre-SET (HMM E-Value=0.11)
Length = 291
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +2
Query: 278 CATKMCGCVKSERACRPAC-RCQHALCRNRRAAPASDSD 391
C+++ C C + + C AC C+ C N S SD
Sbjct: 253 CSSRKCSCKRHDLDCTAACGTCRGQSCDNSSPPDLSKSD 291
>SB_35556| Best HMM Match : Pre-SET (HMM E-Value=2.9)
Length = 91
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +2
Query: 278 CATKMCGCVKSERACRPAC-RCQHALCRNRRAAPASDSD 391
C+++ C C + + C AC C+ C N S SD
Sbjct: 53 CSSRKCSCKRHDLDCTAACGTCRGQSCDNSSPPDLSKSD 91
>SB_10195| Best HMM Match : CXC (HMM E-Value=0.003)
Length = 1365
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +2
Query: 248 RCSAARQRGSCATKMCGCVKSERACRPACRCQHALCRNRRAAPASD-SDDKENNPSSTE 421
+C QR C+T C C K+ C C C + P + S+++E + SS E
Sbjct: 1301 KCGCLTQR--CSTNRCQCRKAGLPCTDLCGC----ADDEEGEPCQNVSEEEEGSESSDE 1353
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,102,702
Number of Sequences: 59808
Number of extensions: 292399
Number of successful extensions: 989
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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