Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0184
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical...    30   1.7  
Z93382-11|CAI46609.1|  390|Caenorhabditis elegans Hypothetical p...    30   2.2  
Z93382-10|CAB07611.2| 1235|Caenorhabditis elegans Hypothetical p...    30   2.2  
Z70757-1|CAA94805.1|  497|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AY305837-1|AAR11982.1|  376|Caenorhabditis elegans nuclear recep...    29   2.9  
AF016443-4|AAC24282.2|  376|Caenorhabditis elegans Nuclear hormo...    29   2.9  
Z48783-5|CAA88699.1| 1385|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z35599-2|CAD91629.2|  584|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z35599-1|CAA84659.2|  581|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z79758-6|CAD98729.1|  673|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AY037802-1|AAK94767.1|  669|Caenorhabditis elegans GLY-2 protein.      28   6.8  
AY037800-1|AAK94765.1|  661|Caenorhabditis elegans GLY-2 protein.      28   6.8  
AF154122-1|AAF74523.1|  669|Caenorhabditis elegans N-acetylgluco...    28   6.8  
AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (droso...    28   6.8  
AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (droso...    28   6.8  
AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (droso...    28   6.8  
AC006625-9|AAK68273.1|  669|Caenorhabditis elegans Glycosylation...    28   6.8  

>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
           protein Y26D4A.9 protein.
          Length = 1435

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/76 (22%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = +1

Query: 7   RTTYSPCSNR-KSLSNVYSSCWSTPSRELQNQSEKGYQA-RYEEVKEAHDRLAVEFDNSK 180
           R+ Y+ C N+ +   +  +   +   +E +   + G    + E+ KE  ++   EF   K
Sbjct: 689 RSDYTDCLNKVRKAEDTLAKIENKYKKESEEVKKTGKNKDKVEKTKEEVEKAKEEFQKVK 748

Query: 181 AEFERQLMNVKKQSEQ 228
            EF++++  VKK  ++
Sbjct: 749 EEFQKEVEKVKKVEKE 764


>Z93382-11|CAI46609.1|  390|Caenorhabditis elegans Hypothetical
           protein F45G2.2b protein.
          Length = 390

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 121 RYEEVKEAHDRLAVEFDNSKAEFERQLMNVKKQSE 225
           +YEE K AH+R  +  D    E E    N+K +SE
Sbjct: 41  QYEETKAAHERDRMLLDKRNKEIEELNRNLKAESE 75


>Z93382-10|CAB07611.2| 1235|Caenorhabditis elegans Hypothetical
           protein F45G2.2a protein.
          Length = 1235

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 121 RYEEVKEAHDRLAVEFDNSKAEFERQLMNVKKQSE 225
           +YEE K AH+R  +  D    E E    N+K +SE
Sbjct: 886 QYEETKAAHERDRMLLDKRNKEIEELNRNLKAESE 920


>Z70757-1|CAA94805.1|  497|Caenorhabditis elegans Hypothetical
           protein ZK287.1 protein.
          Length = 497

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 269 RGSCA-TKMCGCVKSERACRPACRCQHALCRNRRA 370
           + +CA ++ C C++ +  C   C C+  +C+N+ A
Sbjct: 68  KNACAKSERCDCLRIKEGCSKLCACKQ-ICKNKEA 101


>AY305837-1|AAR11982.1|  376|Caenorhabditis elegans nuclear receptor
           NHR-124 protein.
          Length = 376

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +2

Query: 323 RPACR-CQHALCRN--RRAAPASDSDDKENNPSSTEISLDTTPPSYFDKRNHLDATF 484
           RP CR C++  C N   R   +S+S  + +   S + S+    P +   + H+D+TF
Sbjct: 66  RPKCRSCRYKKCVNLGMRYHNSSESQTQSDEEPSPKQSVVAVVPQHIITQAHIDSTF 122


>AF016443-4|AAC24282.2|  376|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 124 protein.
          Length = 376

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +2

Query: 323 RPACR-CQHALCRN--RRAAPASDSDDKENNPSSTEISLDTTPPSYFDKRNHLDATF 484
           RP CR C++  C N   R   +S+S  + +   S + S+    P +   + H+D+TF
Sbjct: 66  RPKCRSCRYKKCVNLGMRYHNSSESQTQSDEEPSPKQSVVAVVPQHIITQAHIDSTF 122


>Z48783-5|CAA88699.1| 1385|Caenorhabditis elegans Hypothetical protein
            F33H1.4 protein.
          Length = 1385

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +2

Query: 362  RRAAPASDSDDKENNPSSTEISLDTTPPSYFDKRNHLDATFVK 490
            +RA P  D  D +++    E    T     F +RN L   FVK
Sbjct: 1001 KRAKPGVDQHDPDDSHEDAEAICTTNSQQSFGRRNRLKRKFVK 1043


>Z35599-2|CAD91629.2|  584|Caenorhabditis elegans Hypothetical
           protein F25F2.1b protein.
          Length = 584

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 79  SRELQNQSEKGYQARYEEVKEAHDRLAVEFDNSKAEFERQLMNVKKQ 219
           S E +N+ +K  Q   ++ KEA D    E      E +RQL  VK +
Sbjct: 29  SLEKKNKKDKKKQKERKKKKEARDSSTSEESEESGESQRQLEKVKSK 75


>Z35599-1|CAA84659.2|  581|Caenorhabditis elegans Hypothetical
           protein F25F2.1a protein.
          Length = 581

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 79  SRELQNQSEKGYQARYEEVKEAHDRLAVEFDNSKAEFERQLMNVKKQ 219
           S E +N+ +K  Q   ++ KEA D    E      E +RQL  VK +
Sbjct: 29  SLEKKNKKDKKKQKERKKKKEARDSSTSEESEESGESQRQLEKVKSK 75


>Z79758-6|CAD98729.1|  673|Caenorhabditis elegans Hypothetical
           protein W10D5.3e protein.
          Length = 673

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 380 SDSDDKENNPSSTEISLDTTPPSYFDKRNHLDATFV 487
           SD DD+E N +S E++   TPP    K    D   +
Sbjct: 504 SDDDDEELNRASAELAAQKTPPQQKKKTKDDDIEII 539


>AY037802-1|AAK94767.1|  669|Caenorhabditis elegans GLY-2 protein.
          Length = 669

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 70  STPSRELQNQSEKGYQARYEEVKEAHDRLAVEFDN-SKAEFERQLMNVK 213
           S  S+    +SEK Y  +  E  E+ + ++V+FD  S++E  R   NV+
Sbjct: 29  SNESKRYSEESEKNYGYQTLEFTESPEEISVDFDKYSQSECSRFPSNVE 77


>AY037800-1|AAK94765.1|  661|Caenorhabditis elegans GLY-2 protein.
          Length = 661

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 70  STPSRELQNQSEKGYQARYEEVKEAHDRLAVEFDN-SKAEFERQLMNVK 213
           S  S+    +SEK Y  +  E  E+ + ++V+FD  S++E  R   NV+
Sbjct: 21  SNESKRYSEESEKNYGYQTLEFTESPEEISVDFDKYSQSECSRFPSNVE 69


>AF154122-1|AAF74523.1|  669|Caenorhabditis elegans
           N-acetylglucosaminyltransferase V protein.
          Length = 669

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 70  STPSRELQNQSEKGYQARYEEVKEAHDRLAVEFDN-SKAEFERQLMNVK 213
           S  S+    +SEK Y  +  E  E+ + ++V+FD  S++E  R   NV+
Sbjct: 29  SNESKRYSEESEKNYGYQTLEFTESPEEISVDFDKYSQSECSRFPSNVE 77


>AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin
           (drosophila actin-binding)homolog protein 1, isoform a
           protein.
          Length = 4488

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 103 EKGYQARYEEVKEAHDRLAVEFDNSKAEFERQLMNVKKQSEQK 231
           E+   A    ++E  DRL V F+  KAE ER L   ++Q E +
Sbjct: 30  ERQRDAENRRIREEQDRLRVLFEREKAERER-LEEERRQLEHE 71


>AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin
           (drosophila actin-binding)homolog protein 1, isoform d
           protein.
          Length = 4369

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 103 EKGYQARYEEVKEAHDRLAVEFDNSKAEFERQLMNVKKQSEQK 231
           E+   A    ++E  DRL V F+  KAE ER L   ++Q E +
Sbjct: 30  ERQRDAENRRIREEQDRLRVLFEREKAERER-LEEERRQLEHE 71


>AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin
           (drosophila actin-binding)homolog protein 1, isoform c
           protein.
          Length = 4447

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 103 EKGYQARYEEVKEAHDRLAVEFDNSKAEFERQLMNVKKQSEQK 231
           E+   A    ++E  DRL V F+  KAE ER L   ++Q E +
Sbjct: 30  ERQRDAENRRIREEQDRLRVLFEREKAERER-LEEERRQLEHE 71


>AC006625-9|AAK68273.1|  669|Caenorhabditis elegans Glycosylation
           related protein 2 protein.
          Length = 669

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 70  STPSRELQNQSEKGYQARYEEVKEAHDRLAVEFDN-SKAEFERQLMNVK 213
           S  S+    +SEK Y  +  E  E+ + ++V+FD  S++E  R   NV+
Sbjct: 29  SNESKRYSEESEKNYGYQTLEFTESPEEISVDFDKYSQSECSRFPSNVE 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,656,983
Number of Sequences: 27780
Number of extensions: 206884
Number of successful extensions: 850
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)