Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0184
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   4.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   5.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.8  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 124 YEEVKEAHDRLAVEFDNSKAEFERQLMN 207
           Y+ +  +HD L    +   ++FE  LMN
Sbjct: 51  YKTLISSHDELPGHINCDSSKFEEDLMN 78


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +3

Query: 423 YHWTRHRPRILINEIILTRHLLKKRRAISSHXXXXXXXXDPL 548
           YH  R    I   ++I  RHL ++  +I ++        DP+
Sbjct: 622 YHVLRGNENIYSGKLISMRHLKEEVSSIETNYECGLRFEDPM 663


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +1

Query: 67   WSTPSRELQNQSEKGYQARYEEVKEAH 147
            WS P  EL++   +G+   Y E   ++
Sbjct: 1027 WSPPLPELRHGDIQGFNVGYRETSSSN 1053


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +1

Query: 67   WSTPSRELQNQSEKGYQARYEEVKEAH 147
            WS P  EL++   +G+   Y E   ++
Sbjct: 1023 WSPPLPELRHGDIQGFNVGYRETSSSN 1049


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,108
Number of Sequences: 438
Number of extensions: 2106
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)