Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0184
(800 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60930.1 68418.m07643 chromosome-associated kinesin, putative... 43 3e-04
At5g33300.1 68418.m03950 chromosome-associated kinesin-related c... 34 0.096
At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) / polyc... 34 0.13
At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical t... 31 0.67
At5g39950.1 68418.m04844 thioredoxin H-type 2 (TRX-H-2) (Gif2) i... 30 2.1
At3g22760.1 68416.m02870 CXC domain containing TSO1-like protein... 30 2.1
At5g25790.1 68418.m03061 tesmin/TSO1-like CXC domain-containing ... 29 2.7
At4g08180.3 68417.m01353 oxysterol-binding family protein simila... 29 2.7
At4g08180.2 68417.m01352 oxysterol-binding family protein simila... 29 2.7
At1g33480.1 68414.m04144 zinc finger (C3HC4-type RING finger) fa... 29 4.7
At5g15070.1 68418.m01766 expressed protein 28 6.3
At5g05180.2 68418.m00552 expressed protein 28 8.3
At5g05180.1 68418.m00551 expressed protein 28 8.3
At4g14770.1 68417.m02272 tesmin/TSO1-like CXC domain-containing ... 28 8.3
At3g16160.1 68416.m02040 tesmin/TSO1-like CXC domain-containing ... 28 8.3
>At5g60930.1 68418.m07643 chromosome-associated kinesin, putative
microtubule-associated motor KIF4 , Mus musculus,
PIR:A54803
Length = 1294
Score = 42.7 bits (96), Expect = 3e-04
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = +2
Query: 251 CSAARQRGSCATKMCGCVKSERACRPACRCQHALCRNRRAAPASDSDDKENNPSSTEISL 430
C + SC T C C ++ +C P+C C C NR A D KENN S +L
Sbjct: 1059 CCTCSKSSSCKTMKCQCRATKGSCGPSCGCSSVKCSNRNA------DGKENNSISESEAL 1112
Query: 431 D 433
+
Sbjct: 1113 E 1113
>At5g33300.1 68418.m03950 chromosome-associated kinesin-related
contains weak similarity to chromosome-associated
kinesin KIF4A (Chromokinesin) (Swiss-Prot:P33174) [Mus
musculus]
Length = 439
Score = 34.3 bits (75), Expect = 0.096
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +2
Query: 251 CSAARQRGSCATKMCGCVKSERACRPACRCQHALCRNRRAAPASD 385
C + ++ C TK C C + C +C C + C NR + D
Sbjct: 344 CCSCTKKSLCKTKSCKCKANGSGCGDSCGCLASKCSNRDESAKPD 388
>At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) /
polycomb-group protein identical to polycomb group
[Arabidopsis thaliana] GI:1903019 (curly leaf); contains
Pfam profile PF00856: SET domain
Length = 902
Score = 33.9 bits (74), Expect = 0.13
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 272 GSCATKMCGCVKSERACRPACRCQHALCRNRR 367
G+C K CGC KS + C C + CR+R+
Sbjct: 671 GTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQ 702
>At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical to
enhancer of zeste-like protein 1(EZA1) (GI:4185507)
[Arabidopsis thaliana]; similar to polycomb group
[Arabidopsis thaliana] GI:1903019 (curly leaf); contains
Pfam profile PF00856: SET domain
Length = 856
Score = 31.5 bits (68), Expect = 0.67
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 275 SCATKMCGCVKSERACRPACRCQHALCRNRR 367
+C K CGC KS + C C + CR+R+
Sbjct: 628 TCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQ 658
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 224 NKS*RRYWRCSAARQRGSCATKMCGCVKSERACRPACRCQHALCRNR 364
N+S ++Y C G K C C+ +E C C C + C+NR
Sbjct: 602 NQSCKQYTPCGCLSMCG----KDCPCLTNETCCEKYCGCSKS-CKNR 643
>At5g39950.1 68418.m04844 thioredoxin H-type 2 (TRX-H-2) (Gif2)
identical to SP|Q38879 Thioredoxin H-type 2 (TRX-H-2)
{Arabidopsis thaliana}; identical to cDNA (Gif2) mRNA
for thioredoxin GI:992963
Length = 133
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 70 STPSRELQNQSEKGYQARYEEVKEAHDRLAVEFDNS 177
S PSR L+ S +Q + E+KE++ L V+F S
Sbjct: 22 SEPSRVLKFSSSARWQLHFNEIKESNKLLVVDFSAS 57
>At3g22760.1 68416.m02870 CXC domain containing TSO1-like protein 1
(SOL1) identical to CXC domain containing TSO1-like
protein 1 (SOL1) [Arabidopsis thaliana] GI:7767427;
contains Pfam profile PF03638: Tesmin/TSO1-like CXC
domain; supporting cDNA
gi|7767426|gb|AF205142.1|AF205142
Length = 609
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +2
Query: 266 QRGSCATKMCGCVKSERACRPACRCQHALCRNR--RAAPASDSDDKENNPSST 418
++ +C K C C + C CRC+ C+N R + D+EN S T
Sbjct: 419 KKSNCLKKYCECYQGGVGCSINCRCEG--CKNAFGRKDGSLFEQDEENETSGT 469
>At5g25790.1 68418.m03061 tesmin/TSO1-like CXC domain-containing
protein similar to SP|Q9Y4I5 Tesmin
(Metallothionein-like 5, testis-specific) {Homo
sapiens}; contains Pfam profile PF03638:
Tesmin/TSO1-like CXC domain
Length = 408
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 266 QRGSCATKMCGCVKSERACRPACRCQHALCRN 361
++ C K C C ++ C CRCQ C+N
Sbjct: 148 RKSGCLKKYCECYQANILCSENCRCQD--CKN 177
>At4g08180.3 68417.m01353 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 813
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +2
Query: 338 CQHALCRNRRAAPASDSDDKENNPSSTEISLDTTPPSYFDKRNHLDATFVKKKKSYF 508
C L + + A++SDD + E D ++FD R+ L ++ K S F
Sbjct: 331 CSGELRHEKFSGTATESDDDNERGDAAEEEFDEEENTFFDTRDFLSSSSFKSSGSGF 387
>At4g08180.2 68417.m01352 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 813
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +2
Query: 338 CQHALCRNRRAAPASDSDDKENNPSSTEISLDTTPPSYFDKRNHLDATFVKKKKSYF 508
C L + + A++SDD + E D ++FD R+ L ++ K S F
Sbjct: 331 CSGELRHEKFSGTATESDDDNERGDAAEEEFDEEENTFFDTRDFLSSSSFKSSGSGF 387
>At1g33480.1 68414.m04144 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 508
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Frame = +2
Query: 329 ACRCQHALC--RNRRAAPA-SDSDDKENNPSSTEISLDTTPPS---YFDKRNHLDATFVK 490
+CR H C R+ + A +++ D NN S + L+ TPP YF+ R F+
Sbjct: 257 SCRTVHYCCVSRDNQIMYAYNNAGDHRNNESLAALCLEKTPPFHKWYFETRGKKTFGFLM 316
Query: 491 KKKSYFF 511
K +F
Sbjct: 317 KDDFVYF 323
>At5g15070.1 68418.m01766 expressed protein
Length = 1049
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = -3
Query: 438 VVSSDISVLDGLFSLSSESEAGAAR 364
+VS D S+LDGL + SSE EA A+
Sbjct: 574 LVSKDSSMLDGLDNASSEMEAAKAQ 598
>At5g05180.2 68418.m00552 expressed protein
Length = 408
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 85 ELQNQSEKGYQARYEEVKEAHDRLAVEFDNSKAEFERQLMNVKKQSEQ 228
E N+ ++ RY+ + D + E DN KAE + + +++ EQ
Sbjct: 249 EALNKDFDKHKLRYDMLMAEKDGVCAEVDNLKAEMRSRDIQIQQMEEQ 296
>At5g05180.1 68418.m00551 expressed protein
Length = 432
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 85 ELQNQSEKGYQARYEEVKEAHDRLAVEFDNSKAEFERQLMNVKKQSEQ 228
E N+ ++ RY+ + D + E DN KAE + + +++ EQ
Sbjct: 273 EALNKDFDKHKLRYDMLMAEKDGVCAEVDNLKAEMRSRDIQIQQMEEQ 320
>At4g14770.1 68417.m02272 tesmin/TSO1-like CXC domain-containing
protein similar to CXC domain containing TSO1-like
protein 1 (SOL1) [Arabidopsis thaliana] GI:7767427, CXC
domain protein TSO1 [Arabidopsis thaliana] GI:7767425;
contains Pfam profile PF03638: Tesmin/TSO1-like CXC
domain
Length = 658
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +2
Query: 266 QRGSCATKMCGCVKSERACRPACRCQHALCRNRRAAPASDSDDKE 400
++ +C K C C + C CRC+ C+N S D E
Sbjct: 450 KKSNCLKKYCECYQGGVGCSINCRCEG--CKNAFGRKDGSSIDME 492
>At3g16160.1 68416.m02040 tesmin/TSO1-like CXC domain-containing
protein low similarity to cysteine-rich polycomb-like
protein (cpp1) [Glycine max] GI:4218187; contains Pfam
profile PF03638: Tesmin/TSO1-like CXC domain
Length = 360
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = +2
Query: 251 CSAARQRGSCATKMCGCVKSERACRPACRCQHALCRNRRAAPASDSDDKENNP 409
C R R C K C C ++ C C+C + C+N A + N+P
Sbjct: 149 CKCKRTR--CLKKYCECFQANLLCSDNCKCIN--CKNVSEAFQPPAFSAHNSP 197
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,768,846
Number of Sequences: 28952
Number of extensions: 187120
Number of successful extensions: 701
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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