Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0183
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    33   0.062
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    26   5.4  

>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 32.7 bits (71), Expect = 0.062
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 513 PAKVANVKCPQQVIAFYEERLTW 581
           P+ + N KCPQ+++ FYE  LT+
Sbjct: 302 PSTITNKKCPQKMLQFYESHLTF 324


>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +3

Query: 429 EKIIGASDATGELMFLIKWTDSDEAELVPAKVANVKCPQQVIAFYEERL 575
           ++IIG    TGE +F IK    DE + V A +A     +++IA +  RL
Sbjct: 40  DRIIGTRSETGERLFSIK---KDEDDYVTA-LAITSDSKKLIAAFRSRL 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,232,225
Number of Sequences: 5004
Number of extensions: 33041
Number of successful extensions: 75
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)