Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0183
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0028 - 359988-359996,360228-360332,360415-360536,360676-36...    38   0.009
05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,753...    33   0.35 
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662...    33   0.35 
10_05_0046 + 8516043-8516425,8517908-8518019,8518276-8518377,851...    32   0.61 
03_01_0227 - 1797353-1798519                                           30   1.9  

>10_01_0028 -
           359988-359996,360228-360332,360415-360536,360676-360763,
           360988-361056,361132-361461,361544-361610,361695-361753,
           361838-362056,362224-362289,362370-362500,362683-362782,
           362864-363001,363111-363218,363627-363723,363806-364257
          Length = 719

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 17/26 (65%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 150 KGYKEEESTWEPVENL-DCEELIKTF 224
           KGY  EE TWEP+ENL DC   IK F
Sbjct: 441 KGYGREEDTWEPIENLRDCPLKIKEF 466


>05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,
            7535889-7535932,7536042-7536146,7536223-7536344,
            7536807-7536894,7536966-7537052,7537718-7537786,
            7537859-7538188,7539777-7539824,7540003-7540069,
            7540150-7540208,7541220-7541453,7541536-7541601,
            7541684-7541883,7542104-7542197,7542295-7542414,
            7542596-7542703,7542808-7542871,7543378-7543409,
            7546049-7548007
          Length = 1407

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 150  KGYKEEESTWEPVENL-DCEELIKTF 224
            KGY     TWEPVE L +C+E I+ F
Sbjct: 963  KGYGPHHDTWEPVEGLRNCKEAIRDF 988


>03_02_0234 +
           6625417-6626184,6626314-6626339,6626435-6626531,
           6627009-6627116,6627194-6627328,6627429-6627528,
           6627763-6627974,6628060-6628125,6628231-6628464,
           6628583-6628641,6628716-6628782,6628863-6629192,
           6629267-6629335,6629417-6629503,6629605-6629692,
           6630057-6630178,6630251-6630355,6630442-6630485,
           6630558-6630627,6630711-6630814,6630980-6631189,
           6632935-6633018,6633291-6634003,6634115-6634649,
           6634703-6634789,6634826-6634970,6635049-6635125,
           6635215-6635359,6635462-6635626,6635725-6635958
          Length = 1761

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 150 KGYKEEESTWEPVENL-DCEELIKTF 224
           KGY     TWEP++ L DC E IK F
Sbjct: 586 KGYDPSYDTWEPIDGLSDCPERIKEF 611


>10_05_0046 +
           8516043-8516425,8517908-8518019,8518276-8518377,
           8518605-8518657,8518976-8519062,8519162-8519830,
           8520154-8520214,8520295-8520342
          Length = 504

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 150 KGYKEEESTWEPVENLD-CEELIKTF 224
           +G+ E  +TWEP+ENL  C ++I  F
Sbjct: 218 RGWPESANTWEPLENLSACSDIIDAF 243


>03_01_0227 - 1797353-1798519
          Length = 388

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
 Frame = +3

Query: 408 FDKGLK---AEKIIG---ASDATGELMFLIKWTDSDEAELVPAKVANVKCPQQ 548
           FD GL+   AE ++    A++  G+  +L+KW D +EA   PA+  + +  Q+
Sbjct: 314 FDAGLEYAVAEAVVNKREAAEGEGKWEYLVKWVDIEEATWEPAENVDAELLQE 366



 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 165 EESTWEPVENLDCEEL 212
           EE+TWEP EN+D E L
Sbjct: 349 EEATWEPAENVDAELL 364


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,437,078
Number of Sequences: 37544
Number of extensions: 207406
Number of successful extensions: 411
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)