Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0183
         (800 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39782| Best HMM Match : Chromo_shadow (HMM E-Value=1.4e-23)         88   7e-18
SB_26989| Best HMM Match : Chromo (HMM E-Value=5.5e-10)                34   0.15 
SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)                 32   0.62 
SB_10723| Best HMM Match : Chromo (HMM E-Value=0.031)                  31   0.82 
SB_32465| Best HMM Match : Chromo (HMM E-Value=3.5e-16)                29   3.3  
SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  

>SB_39782| Best HMM Match : Chromo_shadow (HMM E-Value=1.4e-23)
          Length = 226

 Score = 88.2 bits (209), Expect = 7e-18
 Identities = 50/144 (34%), Positives = 73/144 (50%)
 Frame = +3

Query: 150 KGYKEEESTWEPVENLDCEELIKTFXXXXXXXXXXXXXXXDRAKKRVRESSEETSSGRKG 329
           KGY + E+TWE  E L C ELI+ +                 + KR   +SE+  S  K 
Sbjct: 50  KGYPDSENTWESEEGLQCPELIEEYEKKKKA-----------SSKRKDSTSEKGESKPKK 98

Query: 330 RGASVSSADXXXXXXXXXXXXXXXTGFDKGLKAEKIIGASDATGELMFLIKWTDSDEAEL 509
           R  +                        +G +A+ I+GA++  G++ FLI+W  +D A+L
Sbjct: 99  RKVNAYEELGMKAVEVEDASKDDVDPIAEGWEADTILGATEVDGQIHFLIQWKSTDRADL 158

Query: 510 VPAKVANVKCPQQVIAFYEERLTW 581
           +P+KVAN+K PQ VI FYEER+TW
Sbjct: 159 IPSKVANLKWPQIVIKFYEERVTW 182


>SB_26989| Best HMM Match : Chromo (HMM E-Value=5.5e-10)
          Length = 517

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 12/26 (46%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
 Frame = +3

Query: 150 KGYKEEESTWEPVENL-DCEELIKTF 224
           KGY  ++ TWEP EN+ +CE++++ F
Sbjct: 24  KGYTPDDDTWEPEENVFECEDVLEEF 49


>SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)
          Length = 1373

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 150  KGYKEEESTWEPVENL-DCEELIKTF 224
            KGY   + TWEP +NL  C+ELI  F
Sbjct: 927  KGYGPADDTWEPSKNLKGCKELIDNF 952


>SB_10723| Best HMM Match : Chromo (HMM E-Value=0.031)
          Length = 191

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 147 GKGYKEEESTWEPVENLDCE 206
           GKG+   ++TWEPVEN+  E
Sbjct: 51  GKGFSPYDATWEPVENMTSE 70


>SB_32465| Best HMM Match : Chromo (HMM E-Value=3.5e-16)
          Length = 411

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 150 KGYKEEESTWEPVENLDCEELIKTF 224
           KGY +  +TWEP EN+    L+K +
Sbjct: 47  KGYSQRYNTWEPEENVLDPRLLKAY 71


>SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2541

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +3

Query: 150 KGYKEEESTWEPVENL 197
           K YK  ESTWEP+ENL
Sbjct: 45  KKYKVWESTWEPLENL 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,502,938
Number of Sequences: 59808
Number of extensions: 235203
Number of successful extensions: 463
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)