Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0183
(800 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92803-2|CAB07241.1| 175|Caenorhabditis elegans Hypothetical pr... 59 4e-09
AF123574-1|AAD21197.1| 175|Caenorhabditis elegans chromo-domain... 59 4e-09
Z70210-6|CAA94152.1| 184|Caenorhabditis elegans Hypothetical pr... 52 4e-07
AF056580-1|AAC78602.1| 184|Caenorhabditis elegans heterochromat... 52 4e-07
Z92803-4|CAB54267.2| 303|Caenorhabditis elegans Hypothetical pr... 41 9e-04
Z92803-3|CAB07243.2| 301|Caenorhabditis elegans Hypothetical pr... 41 9e-04
AF123573-1|AAD21196.1| 301|Caenorhabditis elegans chromo-domain... 41 9e-04
U61944-4|AAB03120.1| 891|Caenorhabditis elegans Hypothetical pr... 33 0.18
AF016662-3|AAB66057.1| 461|Caenorhabditis elegans Hypothetical ... 29 5.1
Z92822-5|CAD45612.3| 743|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z92822-4|CAD18893.2| 791|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z92822-3|CAB07302.3| 774|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z92822-2|CAB70188.2| 850|Caenorhabditis elegans Hypothetical pr... 28 8.9
U58084-1|AAC47121.1| 743|Caenorhabditis elegans CUL-2 protein. 28 8.9
>Z92803-2|CAB07241.1| 175|Caenorhabditis elegans Hypothetical
protein K01G5.2a protein.
Length = 175
Score = 58.8 bits (136), Expect = 4e-09
Identities = 43/147 (29%), Positives = 65/147 (44%)
Frame = +3
Query: 150 KGYKEEESTWEPVENLDCEELIKTFXXXXXXXXXXXXXXXDRAKKRVRESSEETSSGRKG 329
+G+ E +S+WEP ENL C E++ F + +K +R+ +
Sbjct: 42 QGFPESDSSWEPRENLQCVEMLDEFEREF-----------SKREKPIRKRHSQKPE---- 86
Query: 330 RGASVSSADXXXXXXXXXXXXXXXTGFDKGLKAEKIIGASDATGELMFLIKWTDSDEAEL 509
S AD +G + + I+G + GEL FL K++D D A L
Sbjct: 87 --PSEDQADPEEDKDEKKETNQNDKFSLEGKQLKCIVGLTKGPGELHFLCKFSD-DTARL 143
Query: 510 VPAKVANVKCPQQVIAFYEERLTWHTP 590
+PAK N + P QVI +YE +LT P
Sbjct: 144 LPAKEVNSRYPSQVIRYYESKLTIQDP 170
>AF123574-1|AAD21197.1| 175|Caenorhabditis elegans chromo-domain
protein protein.
Length = 175
Score = 58.8 bits (136), Expect = 4e-09
Identities = 43/147 (29%), Positives = 65/147 (44%)
Frame = +3
Query: 150 KGYKEEESTWEPVENLDCEELIKTFXXXXXXXXXXXXXXXDRAKKRVRESSEETSSGRKG 329
+G+ E +S+WEP ENL C E++ F + +K +R+ +
Sbjct: 42 QGFPESDSSWEPRENLQCVEMLDEFEREF-----------SKREKPIRKRHSQKPE---- 86
Query: 330 RGASVSSADXXXXXXXXXXXXXXXTGFDKGLKAEKIIGASDATGELMFLIKWTDSDEAEL 509
S AD +G + + I+G + GEL FL K++D D A L
Sbjct: 87 --PSEDQADPEEDKDEKKETNQNDKFSLEGKQLKCIVGLTKGPGELHFLCKFSD-DTARL 143
Query: 510 VPAKVANVKCPQQVIAFYEERLTWHTP 590
+PAK N + P QVI +YE +LT P
Sbjct: 144 LPAKEVNSRYPSQVIRYYESKLTIQDP 170
>Z70210-6|CAA94152.1| 184|Caenorhabditis elegans Hypothetical
protein K08H2.6 protein.
Length = 184
Score = 52.4 bits (120), Expect = 4e-07
Identities = 27/53 (50%), Positives = 34/53 (64%)
Frame = +3
Query: 417 GLKAEKIIGASDATGELMFLIKWTDSDEAELVPAKVANVKCPQQVIAFYEERL 575
G + IIG + A GEL FL K++D D L+P + ANV+ P QVI FYE RL
Sbjct: 119 GKTLKTIIGITKAPGELHFLCKFSD-DSVHLIPLREANVRFPSQVIKFYETRL 170
Score = 36.7 bits (81), Expect = 0.019
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 138 Y*NGKGYKEEESTWEPVENLDCEELIKTF 224
Y +G+ E E +WEP+ENL C+ +I+ +
Sbjct: 55 YIKWQGFPESECSWEPIENLQCDRMIQEY 83
>AF056580-1|AAC78602.1| 184|Caenorhabditis elegans heterochromatin
protein 1 homolog protein.
Length = 184
Score = 52.4 bits (120), Expect = 4e-07
Identities = 27/53 (50%), Positives = 34/53 (64%)
Frame = +3
Query: 417 GLKAEKIIGASDATGELMFLIKWTDSDEAELVPAKVANVKCPQQVIAFYEERL 575
G + IIG + A GEL FL K++D D L+P + ANV+ P QVI FYE RL
Sbjct: 119 GKTLKTIIGITKAPGELHFLCKFSD-DSVHLIPLREANVRFPSQVIKFYETRL 170
Score = 36.7 bits (81), Expect = 0.019
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 138 Y*NGKGYKEEESTWEPVENLDCEELIKTF 224
Y +G+ E E +WEP+ENL C+ +I+ +
Sbjct: 55 YIKWQGFPESECSWEPIENLQCDRMIQEY 83
>Z92803-4|CAB54267.2| 303|Caenorhabditis elegans Hypothetical
protein K01G5.2c protein.
Length = 303
Score = 41.1 bits (92), Expect = 9e-04
Identities = 37/139 (26%), Positives = 58/139 (41%)
Frame = +3
Query: 150 KGYKEEESTWEPVENLDCEELIKTFXXXXXXXXXXXXXXXDRAKKRVRESSEETSSGRKG 329
+G+ E +S+WEP ENL C E++ F + +K +R+ +
Sbjct: 42 QGFPESDSSWEPRENLQCVEMLDEF-----------EREFSKREKPIRKRHSQKPE---- 86
Query: 330 RGASVSSADXXXXXXXXXXXXXXXTGFDKGLKAEKIIGASDATGELMFLIKWTDSDEAEL 509
S AD +G + + I+G + GEL FL K++D D A L
Sbjct: 87 --PSEDQADPEEDKDEKKETNQNDKFSLEGKQLKCIVGLTKGPGELHFLCKFSD-DTARL 143
Query: 510 VPAKVANVKCPQQVIAFYE 566
+PAK N + V A+ E
Sbjct: 144 LPAKEVNSRYRPFVDAYGE 162
>Z92803-3|CAB07243.2| 301|Caenorhabditis elegans Hypothetical
protein K01G5.2b protein.
Length = 301
Score = 41.1 bits (92), Expect = 9e-04
Identities = 37/139 (26%), Positives = 58/139 (41%)
Frame = +3
Query: 150 KGYKEEESTWEPVENLDCEELIKTFXXXXXXXXXXXXXXXDRAKKRVRESSEETSSGRKG 329
+G+ E +S+WEP ENL C E++ F + +K +R+ +
Sbjct: 42 QGFPESDSSWEPRENLQCVEMLDEF-----------EREFSKREKPIRKRHSQKPE---- 86
Query: 330 RGASVSSADXXXXXXXXXXXXXXXTGFDKGLKAEKIIGASDATGELMFLIKWTDSDEAEL 509
S AD +G + + I+G + GEL FL K++D D A L
Sbjct: 87 --PSEDQADPEEDKDEKKETNQNDKFSLEGKQLKCIVGLTKGPGELHFLCKFSD-DTARL 143
Query: 510 VPAKVANVKCPQQVIAFYE 566
+PAK N + V A+ E
Sbjct: 144 LPAKEVNSRYRPFVDAYGE 162
>AF123573-1|AAD21196.1| 301|Caenorhabditis elegans chromo-domain
protein protein.
Length = 301
Score = 41.1 bits (92), Expect = 9e-04
Identities = 37/139 (26%), Positives = 58/139 (41%)
Frame = +3
Query: 150 KGYKEEESTWEPVENLDCEELIKTFXXXXXXXXXXXXXXXDRAKKRVRESSEETSSGRKG 329
+G+ E +S+WEP ENL C E++ F + +K +R+ +
Sbjct: 42 QGFPESDSSWEPRENLQCVEMLDEF-----------EREFSKREKPIRKRHSQKPE---- 86
Query: 330 RGASVSSADXXXXXXXXXXXXXXXTGFDKGLKAEKIIGASDATGELMFLIKWTDSDEAEL 509
S AD +G + + I+G + GEL FL K++D D A L
Sbjct: 87 --PSEDQADPEEDKDEKKETNQNDKFSLEGKQLKCIVGLTKGPGELHFLCKFSD-DTARL 143
Query: 510 VPAKVANVKCPQQVIAFYE 566
+PAK N + V A+ E
Sbjct: 144 LPAKEVNSRYRPFVDAYGE 162
>U61944-4|AAB03120.1| 891|Caenorhabditis elegans Hypothetical
protein T12E12.2 protein.
Length = 891
Score = 33.5 bits (73), Expect = 0.18
Identities = 15/24 (62%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = +3
Query: 150 KGYKEEESTWEPVENLD-CEELIK 218
+GY +E TWEP ENL+ CEEL K
Sbjct: 56 RGYDWKERTWEPEENLENCEELQK 79
>AF016662-3|AAB66057.1| 461|Caenorhabditis elegans Hypothetical
protein C33C12.5 protein.
Length = 461
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -3
Query: 186 QAPKYSLPPYSLXHFN-KYWIFXFDCTFVKN 97
+AP+Y L S+ F K WI C F+KN
Sbjct: 234 EAPRYELTNLSMPGFTAKQWIDHIGCVFLKN 264
>Z92822-5|CAD45612.3| 743|Caenorhabditis elegans Hypothetical
protein ZK520.4d protein.
Length = 743
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +3
Query: 444 ASDATGELMFLIKWTDSDEAELVPAKVANVKCPQQVIAFYEE 569
A++ +G + +K ++D ++VPA+ A K + AFY+E
Sbjct: 181 ANEVSGVINSFVKMEETD-FDVVPAEGARYKARESTTAFYQE 221
>Z92822-4|CAD18893.2| 791|Caenorhabditis elegans Hypothetical
protein ZK520.4c protein.
Length = 791
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +3
Query: 444 ASDATGELMFLIKWTDSDEAELVPAKVANVKCPQQVIAFYEE 569
A++ +G + +K ++D ++VPA+ A K + AFY+E
Sbjct: 198 ANEVSGVINSFVKMEETD-FDVVPAEGARYKARESTTAFYQE 238
>Z92822-3|CAB07302.3| 774|Caenorhabditis elegans Hypothetical
protein ZK520.4b protein.
Length = 774
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +3
Query: 444 ASDATGELMFLIKWTDSDEAELVPAKVANVKCPQQVIAFYEE 569
A++ +G + +K ++D ++VPA+ A K + AFY+E
Sbjct: 181 ANEVSGVINSFVKMEETD-FDVVPAEGARYKARESTTAFYQE 221
>Z92822-2|CAB70188.2| 850|Caenorhabditis elegans Hypothetical
protein ZK520.4a protein.
Length = 850
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +3
Query: 444 ASDATGELMFLIKWTDSDEAELVPAKVANVKCPQQVIAFYEE 569
A++ +G + +K ++D ++VPA+ A K + AFY+E
Sbjct: 257 ANEVSGVINSFVKMEETD-FDVVPAEGARYKARESTTAFYQE 297
>U58084-1|AAC47121.1| 743|Caenorhabditis elegans CUL-2 protein.
Length = 743
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +3
Query: 444 ASDATGELMFLIKWTDSDEAELVPAKVANVKCPQQVIAFYEE 569
A++ +G + +K ++D ++VPA+ A K + AFY+E
Sbjct: 181 ANEVSGVINSFVKMEETD-FDVVPAEGARYKARESTTAFYQE 221
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,440,206
Number of Sequences: 27780
Number of extensions: 186122
Number of successful extensions: 421
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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