Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0183
         (800 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48910.1 68416.m05343 expressed protein                             32   0.39 
At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identic...    31   0.89 
At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to c...    28   8.3  

>At3g48910.1 68416.m05343 expressed protein 
          Length = 224

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +3

Query: 432 KIIGASDATGELMFLIKWTDSD--EAELVPAKVANVKCPQQVIAFYEE 569
           +II      G   F + W D +  E+ +VPA +    CP+++I F E+
Sbjct: 9   EIIKTRKVQGRECFEVSWNDLEGLESSIVPADLVERACPEKIIEFKEK 56


>At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identical
           to chromomethylase CMT2 [Arabidopsis thaliana]
           GI:14583094
          Length = 1295

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 150 KGYKEEESTWEPVENL-DCEELIKTF 224
           KGY+ +E TWE  E L +C++ I+ F
Sbjct: 865 KGYRSDEDTWELAEELSNCQDAIREF 890


>At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to
           chromomethylase GB:AAC02660 GI:2865416 from [Arabidopsis
           thaliana]
          Length = 791

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +3

Query: 150 KGYKEEESTWEPVENL-DCEELIKTF 224
           KGY     TWEP   L +C+E +K +
Sbjct: 367 KGYNSSYDTWEPYSGLGNCKEKLKEY 392


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,629,109
Number of Sequences: 28952
Number of extensions: 170209
Number of successful extensions: 369
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)