Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0182
         (800 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    25   0.93 
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    23   3.7  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    22   5.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   6.5  

>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +3

Query: 213 FDDKMYNAAKLLYNNVSNFARLAITLVHLKEFQGAVDAGEFRL 341
           FDD+     K+ +     F  + I  V + +F+G+  +G++ L
Sbjct: 833 FDDERSLKTKMAWLKEEGFGGIMIWSVDMDDFRGSCGSGKYPL 875



 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = +3

Query: 213 FDDKMYNAAKLLYNNVSNFARLAITLVHLKEFQGAVDAGEFR 338
           FDD+     K+ +   + FA   +  + + +F G V  G+ +
Sbjct: 403 FDDEKSIRNKMKWIKDNGFAGAMVWTIDMDDFSGTVCGGQVK 444


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 163 LSLARIMLTSRKSVTVVSTIRCTTLRNSCITTSAT 267
           L L  I ++SRKS + +   +C T   +C   S+T
Sbjct: 13  LYLTAIYVSSRKSDSGIWYWQCNTDEETCTRISST 47


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +1

Query: 574 PXYSVLLNMPIFGQSW 621
           P   ++L +P FG++W
Sbjct: 289 PSAKIVLGLPTFGRAW 304


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 571 FPXYSVLLNMPIFGQSW 621
           FP   ++L +P FG+S+
Sbjct: 408 FPKSKIVLGVPFFGRSF 424



 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +1

Query: 574  PXYSVLLNMPIFGQSW 621
            P   +++ MP++GQS+
Sbjct: 1632 PRRKIVMGMPLYGQSF 1647


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,080
Number of Sequences: 336
Number of extensions: 3398
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21791490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)