Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0182
(800 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 264 1e-71
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe... 31 0.19
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc... 28 1.3
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 4.1
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 26 5.4
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 26 5.4
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 26 5.4
SPBC28F2.04c |cwf7|spf27|splicing factor Cwf7|Schizosaccharomyce... 26 7.2
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 26 7.2
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 25 9.5
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 264 bits (647), Expect = 1e-71
Identities = 128/252 (50%), Positives = 177/252 (70%), Gaps = 20/252 (7%)
Frame = +3
Query: 45 WDDLVRYLQMARKKARESYIESELIYAYARTGRLADLEEFISGPNHADIQKIGDRCFDDK 224
+++L++YL MAR K E ++S L+ AYA+T +L ++E F+ G N AD++ +GD CF+ K
Sbjct: 1146 YEELIKYLLMARSKMHEPDVDSALLIAYAKTNQLTEMETFLIGSNVADVKAVGDECFESK 1205
Query: 225 MYNAAKLLYNNVSNFARLAITLVHLKEFQGAVDAG--------------------EFRLS 344
Y AAKL+Y+++SN++ LA TLV+L E+QGAVD EFRL+
Sbjct: 1206 NYEAAKLMYSSISNWSMLATTLVYLGEYQGAVDCARKANSIKVWKQVGTACIDKREFRLA 1265
Query: 345 QMCGLHIVVHADELEDLINYYQDRGHFDELISLLEAALGLERAHMGMFTELAILYSKYKP 524
Q+CGL+++VHA+EL LI Y++RG+F+E+ISL+EA LGLERAHM +TELAILY+KYKP
Sbjct: 1266 QICGLNLIVHAEELPGLIRLYEERGYFEEVISLMEAGLGLERAHMAFYTELAILYAKYKP 1325
Query: 525 VKMXEHLELFWSRVNIPXVLRAAEHAHLWSELVFLYDKYXEYDNAALTMMQHPTEAWREG 704
+M EHL+LFW R+N+ V+RA + HLW+E VFLY YDNAA MM+ P EA+
Sbjct: 1326 ERMMEHLKLFWGRLNMAKVIRACDQMHLWNEAVFLYVHDQSYDNAAAVMMEQP-EAFDHQ 1384
Query: 705 HFKDIITKVANM 740
FKDII VAN+
Sbjct: 1385 SFKDIIVHVANL 1396
>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 746
Score = 31.1 bits (67), Expect = 0.19
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = +3
Query: 72 MARKKARESYIESEL--IYAYARTGRLADLEEFISGPNHADIQKIGDRCFDDKMYNAAKL 245
M + K +S E EL + A + D +E + P IQKI + K+++AAK
Sbjct: 399 MCKFKITKSEHERELNQLRNMAEASKTIDYKEDETAPTERRIQKILEYDILSKLFSAAK- 457
Query: 246 LYNNVSNFARLAITLVHLKEFQ 311
YN+++ LA+ LVH+ ++
Sbjct: 458 HYNSLNGL--LAMILVHMANYK 477
>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 78 RKKARESYIESELIYAYARTGRLADLEEFISGPNHAD 188
++K E Y +++ Y R R A FI+ P HAD
Sbjct: 65 KEKTGEKYFSIDILRFYIRCTRCAAEITFITDPKHAD 101
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +1
Query: 118 STLTPAPVASPI*KSLSLARIMLTSRKSVTVVSTIRCTTLRNSCITTSATS 270
S++T + +AS S SLA S S T S+ ++L ++ + SATS
Sbjct: 142 SSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATS 192
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 72 MARKKARESYIESELIYAYARTGRLADLEEF 164
+A +K+R ++S++ AYAR + D+E+F
Sbjct: 355 LAVRKSRGVILQSDIEEAYARAVKPTDMEQF 385
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 375 ADELEDLINYYQDRGHFDELISLLEAALGLERAHMG 482
ADE E+ Y ++ H + + E + LER H G
Sbjct: 104 ADEAENEETSYSEQNHTENTEEIAEESRPLERTHSG 139
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 51 DLVRYLQ-MARKKARESYIESELIYAYARTGRLADLEEFISG 173
+L YL+ ++ K S+ S LIY Y + +L L E++SG
Sbjct: 424 ELTSYLEALSAKGFAFSHEISTLIYLYIKLRKLDKLTEYVSG 465
>SPBC28F2.04c |cwf7|spf27|splicing factor Cwf7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 187
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +3
Query: 51 DLVRYLQMARKKARESYIESELIYAYART 137
D+ RY+Q+ RES ++S +++ Y ++
Sbjct: 76 DVQRYIQLKPPGTRESLLQSAVVWEYQKS 104
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 7.2
Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Frame = +3
Query: 336 RLSQMCGLHIVVHADELEDLINYYQDRGHFDELISLLEAA-LGLERAHMGMF---TELAI 503
RLS++C I++ ++ L QD+ F++ LL ++ L + A + F + A+
Sbjct: 493 RLSKICNSTILLRNEKENFLSTELQDKHVFEQENMLLSSSKLQILAALLKSFQRGCQKAV 552
Query: 504 LYSKYKPVKMXEHLELFWSRVNI 572
+ S+YK + E +ELF S +++
Sbjct: 553 IVSQYK--ETLELIELFLSILHV 573
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 282 ITLVHLKEFQGAVDAGEFRLSQMCGLHIVV 371
+TL +K+F AV+ E++L +C L+ V
Sbjct: 227 LTLEGIKQFYVAVEKEEWKLDTLCDLYETV 256
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,934,949
Number of Sequences: 5004
Number of extensions: 55948
Number of successful extensions: 139
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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