Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0182
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-25... 279 2e-75
11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-23... 279 2e-75
08_02_0098 - 12324664-12324822,12325430-12325543,12325649-123259... 29 4.3
02_03_0177 - 16017650-16019599 28 7.5
01_05_0602 + 23577328-23579805 28 7.5
10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,938... 28 9.9
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929... 28 9.9
>12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-250315,
250429-250556,250764-250862,250953-251061,251301-251380,
251464-251691,251768-251833,251970-252086,252538-252735,
252847-252963,253056-253115,253228-253314,253419-253502,
253623-253757,253837-253899,253979-254083,254174-254286,
254374-254626,254715-254851,254970-255248,255352-256354,
256450-256935,257023-257193,257285-257470,257820-257942,
258024-258134,258225-258395
Length = 1708
Score = 279 bits (684), Expect = 2e-75
Identities = 131/252 (51%), Positives = 185/252 (73%), Gaps = 20/252 (7%)
Frame = +3
Query: 45 WDDLVRYLQMARKKARESYIESELIYAYARTGRLADLEEFISGPNHADIQKIGDRCFDDK 224
+DDLV+YL M R+KARE ++ ELI+AYA+ RL+D+EEFI PN A++Q +GDR +D++
Sbjct: 1164 YDDLVKYLLMVRQKAREPKVDGELIFAYAKIDRLSDIEEFILMPNVANLQNVGDRLYDEE 1223
Query: 225 MYNAAKLLYNNVSNFARLAITLVHLKEFQGAVDAG--------------------EFRLS 344
+Y AAK++Y +SN+A+LA+TLV LK+FQGAVDA EFRL+
Sbjct: 1224 LYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLA 1283
Query: 345 QMCGLHIVVHADELEDLINYYQDRGHFDELISLLEAALGLERAHMGMFTELAILYSKYKP 524
Q+CGL+I+V D+LE++ YYQ+RG F+ELISL+E+ LGLERAHMG+FTEL +LY++Y+P
Sbjct: 1284 QICGLNIIVQVDDLEEVSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRP 1343
Query: 525 VKMXEHLELFWSRVNIPXVLRAAEHAHLWSELVFLYDKYXEYDNAALTMMQHPTEAWREG 704
K+ EH++LF +R+NIP ++RA + W EL +LY +Y E+DNAA T+M H +AW
Sbjct: 1344 EKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPDAWDHM 1403
Query: 705 HFKDIITKVANM 740
FKD+ KVAN+
Sbjct: 1404 QFKDVAVKVANV 1415
>11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-234912,
235048-235175,235383-235481,235572-235680,235920-235999,
236083-236310,236387-236452,236589-236705,237142-237339,
237451-237567,237660-237719,237832-237918,238023-238106,
238233-238367,238446-238508,238588-238692,238781-238893,
238981-239233,239322-239458,239577-239855,239958-240960,
241054-241539,241627-241797,241890-242075,242426-242548,
242630-242740,242834-243004
Length = 1708
Score = 279 bits (684), Expect = 2e-75
Identities = 131/252 (51%), Positives = 185/252 (73%), Gaps = 20/252 (7%)
Frame = +3
Query: 45 WDDLVRYLQMARKKARESYIESELIYAYARTGRLADLEEFISGPNHADIQKIGDRCFDDK 224
+DDLV+YL M R+KARE ++ ELI+AYA+ RL+D+EEFI PN A++Q +GDR +D++
Sbjct: 1164 YDDLVKYLLMVRQKAREPKVDGELIFAYAKIDRLSDIEEFILMPNVANLQNVGDRLYDEE 1223
Query: 225 MYNAAKLLYNNVSNFARLAITLVHLKEFQGAVDAG--------------------EFRLS 344
+Y AAK++Y +SN+A+LA+TLV LK+FQGAVDA EFRL+
Sbjct: 1224 LYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLA 1283
Query: 345 QMCGLHIVVHADELEDLINYYQDRGHFDELISLLEAALGLERAHMGMFTELAILYSKYKP 524
Q+CGL+I+V D+LE++ YYQ+RG F+ELISL+E+ LGLERAHMG+FTEL +LY++Y+P
Sbjct: 1284 QICGLNIIVQVDDLEEVSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRP 1343
Query: 525 VKMXEHLELFWSRVNIPXVLRAAEHAHLWSELVFLYDKYXEYDNAALTMMQHPTEAWREG 704
K+ EH++LF +R+NIP ++RA + W EL +LY +Y E+DNAA T+M H +AW
Sbjct: 1344 EKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPDAWDHM 1403
Query: 705 HFKDIITKVANM 740
FKD+ KVAN+
Sbjct: 1404 QFKDVAVKVANV 1415
>08_02_0098 -
12324664-12324822,12325430-12325543,12325649-12325921,
12326124-12326354,12326444-12326594,12326680-12326759,
12326839-12326913,12326992-12327093,12328000-12328121,
12329726-12329791,12330158-12330201,12330850-12330898,
12330967-12331087,12334631-12334735
Length = 563
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +3
Query: 6 RGTLSLLLPSKXS--WDDLVRYLQMARKKARESYIESELIY 122
R LS L P K W DLV+ L++ R K R + EL+Y
Sbjct: 349 RVDLSDLQPGKVKEVWLDLVKDLEIQRDKKRRGQVHLELLY 389
>02_03_0177 - 16017650-16019599
Length = 649
Score = 28.3 bits (60), Expect = 7.5
Identities = 39/150 (26%), Positives = 61/150 (40%), Gaps = 14/150 (9%)
Frame = +3
Query: 51 DLVRYLQMARKKARESYIE-SELIYAYARTGRLADLEEFISG-PNHADIQK----IGDRC 212
D R L AR + + + LI Y R+GRL D I+ P D + C
Sbjct: 142 DAERVLGAARATGAANVVTYTALIDGYCRSGRLDDALRLIASMPVAPDTYTYNTVLKGLC 201
Query: 213 FDDKMYNAAKLLYNNVSNFARL-AITLV-HLKEF--QGAVDAGEFRLSQM----CGLHIV 368
K A +L+ + N +T ++ F G +D L QM C +V
Sbjct: 202 IAKKWEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVV 261
Query: 369 VHADELEDLINYYQDRGHFDELISLLEAAL 458
+++ LIN + ++GH D+ + LL L
Sbjct: 262 IYST----LINGFSEQGHVDQALDLLNTML 287
>01_05_0602 + 23577328-23579805
Length = 825
Score = 28.3 bits (60), Expect = 7.5
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +3
Query: 93 ESYIESELIYAYARTGRLADLEEFISGPNHADI 191
++++ L+ Y + GRLAD G H D+
Sbjct: 94 DAFLHDSLLNMYCKCGRLADARSVFDGMPHRDV 126
>10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,
9387180-9387325,9387416-9387572,9387720-9387778,
9388204-9388360,9389001-9389150,9389280-9389416,
9390071-9390217,9390292-9390393,9390742-9390799,
9391997-9392034,9392124-9392250,9392320-9392493,
9393125-9393256,9393940-9394049,9394752-9394812,
9395036-9395213,9395326-9395531,9395796-9395915,
9396496-9396594,9396983-9397204,9397482-9397621,
9397741-9397852,9398021-9398071,9398151-9398240,
9398397-9398567,9398663-9398815,9399774-9399950,
9400045-9400182,9400295-9400365,9400739-9400838,
9401324-9401380,9401469-9401525,9401619-9401699,
9401782-9401864,9401975-9402110
Length = 1632
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 30 PSKXSWDDLVRYLQMARKKARESYIESELI 119
PS WD++V++L + E+Y+ S I
Sbjct: 1415 PSNSHWDNIVKFLDLLMDTLHENYVPSFFI 1444
>01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,
9293018-9293700,9295214-9297190,9298330-9298441,
9299848-9299904
Length = 1064
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +3
Query: 72 MARKKARESYIESELIYAYARTGRLADLEEFISGPNHADIQKIGDRCFDDKMYNAAK-LL 248
+ R RE+Y+ESEL+ + L L+ +++ ++ CF+ ++ K L+
Sbjct: 867 LVRLSLRENYLESELVKILGKLHSLLSLKLYVNSYLGTEL------CFEHNLFPRLKQLM 920
Query: 249 YNNVSNFARLA 281
+N+ N L+
Sbjct: 921 IDNLKNLDELS 931
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,809,189
Number of Sequences: 37544
Number of extensions: 384386
Number of successful extensions: 933
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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