Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0182
(800 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18599| Best HMM Match : No HMM Matches (HMM E-Value=.) 385 e-107
SB_14640| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_41058| Best HMM Match : FAT (HMM E-Value=0.0082) 30 2.5
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4) 29 3.3
SB_36210| Best HMM Match : Peptidase_M43 (HMM E-Value=0) 28 7.7
SB_59159| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_10800| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_18599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1501
Score = 385 bits (948), Expect = e-107
Identities = 186/256 (72%), Positives = 213/256 (83%), Gaps = 20/256 (7%)
Frame = +3
Query: 33 SKXSWDDLVRYLQMARKKARESYIESELIYAYARTGRLADLEEFISGPNHADIQKIGDRC 212
S +++DLVRYLQMARKKAR++++E+ELI+AYART RLA+LEEFISGPNHA I ++GDRC
Sbjct: 971 SAGNFEDLVRYLQMARKKARDTFVETELIFAYARTNRLAELEEFISGPNHAQIGQVGDRC 1030
Query: 213 FDDKMYNAAKLLYNNVSNFARLAITLVHLKEFQGAVDA--------------------GE 332
+D MY+AAKLLYNN+SNFA+LA TLVHL E+Q AVD GE
Sbjct: 1031 YDAGMYDAAKLLYNNISNFAKLASTLVHLGEYQAAVDGARKANSTKTWKEVCFACVDGGE 1090
Query: 333 FRLSQMCGLHIVVHADELEDLINYYQDRGHFDELISLLEAALGLERAHMGMFTELAILYS 512
FR++QMCGLHIVVHADELE+LINYYQ+RG F+ELI L+EAALGLERAHMGMFTELAILYS
Sbjct: 1091 FRMAQMCGLHIVVHADELEELINYYQNRGFFEELIGLMEAALGLERAHMGMFTELAILYS 1150
Query: 513 KYKPVKMXEHLELFWSRVNIPXVLRAAEHAHLWSELVFLYDKYXEYDNAALTMMQHPTEA 692
KYKP KM EHLELFWSRVNIP VLRAAE AHLWSELVFLY+KY EYDNA TMMQHPT A
Sbjct: 1151 KYKPSKMREHLELFWSRVNIPKVLRAAEQAHLWSELVFLYEKYEEYDNAVQTMMQHPTVA 1210
Query: 693 WREGHFKDIITKVANM 740
W+EG FKD+I KVAN+
Sbjct: 1211 WKEGLFKDVICKVANI 1226
Score = 31.9 bits (69), Expect = 0.62
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +1
Query: 742 ELXYKAXQFYLXYKPLLLN 798
EL Y++ QFYL +KP+LLN
Sbjct: 1227 ELYYRSLQFYLDFKPMLLN 1245
>SB_14640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 309 QGAVDAGEFRLSQMCGLHIVVHADELEDLINYY 407
+G ++A E R +CG+ + DEL+D++ YY
Sbjct: 235 KGYIEASELR-DLLCGMEKKIPEDELQDMLRYY 266
>SB_41058| Best HMM Match : FAT (HMM E-Value=0.0082)
Length = 628
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Frame = +3
Query: 582 LRAAEHAHLWSELVFLYD-KYXEYDNAALTMM------QHPTEAWREGHFKDIITKVAN 737
+R EH LW + V YD + E A + M+ + P E ++G + ++T++ N
Sbjct: 343 IRTYEHEELWEKAVGAYDLRMQESPTAQIGMLKMIKVSKRPLEILKDGRIETVVTRLVN 401
>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
Length = 1439
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 106 SPN*STLTPAPVASPI*KSLSLARIMLTSRKSVTVVSTIRCTTLRNSCITTSATS 270
+P+ + TPA P+ +LS + ++ S T+ S C N C TTS+T+
Sbjct: 569 APSSAVPTPATAPPPVAATLSAPPPLDSTSGSSTISSATICFGPTNRCTTTSSTT 623
>SB_36210| Best HMM Match : Peptidase_M43 (HMM E-Value=0)
Length = 882
Score = 28.3 bits (60), Expect = 7.7
Identities = 31/101 (30%), Positives = 43/101 (42%), Gaps = 5/101 (4%)
Frame = +3
Query: 210 CFDD-KMYNAAKLL--YNNVSNFARLAITLVHLKEFQGAVDAGEFRLSQMCGLHIVVHAD 380
CFD +Y A L Y + NF V+ K+ D F+ + VH+
Sbjct: 471 CFDPTSLYRAYLSLKEYKELLNFDNARFLNVYFKQCGDNCDE-TFQGTATFPWENTVHSV 529
Query: 381 ELEDLIN--YYQDRGHFDELISLLEAALGLERAHMGMFTEL 497
LIN Y+ +GH + +I ALGL H G+ TEL
Sbjct: 530 LGGVLINPGYFGQKGHSNSIIHEFGHALGLWHVHRGV-TEL 569
>SB_59159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 686
Score = 28.3 bits (60), Expect = 7.7
Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 2/134 (1%)
Frame = +3
Query: 297 LKEFQGAVDAGEFRLSQMCGLHIVVHA-DELEDLINYYQDRGHFDELISLLEAALGLERA 473
+KE G + GE S +H+ + ELE+ + YQ RG F + L
Sbjct: 24 VKELLG--EEGEDVTSPYTSIHVPAFSMSELENFVRLYQQRGGFQKAELPLSTDYKTGNP 81
Query: 474 HMGMFTELAILYSK-YKPVKMXEHLELFWSRVNIPXVLRAAEHAHLWSELVFLYDKYXEY 650
++ L YS +PVK E + + + ++ +S++V LY Y
Sbjct: 82 EYLLYKHLFANYSNVVRPVKRVEEVVPYTFDIGYSQMVNLYTFDIGYSQMVNLYTFDIGY 141
Query: 651 DNAALTMMQHPTEA 692
+ H A
Sbjct: 142 SQMVYLVSIHSISA 155
>SB_10800| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 943
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = -1
Query: 380 VSMYYNVQSTHLRESKFTGVHSTLKFFQMHQSNSKTSEVADVV 252
+S+ ++ S H+ + + G H T+ F++H SN+K+ V V
Sbjct: 493 ISVNRSLVSLHI-DGQHVGPHRTIPNFRLHASNTKSHAVVGAV 534
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,622,304
Number of Sequences: 59808
Number of extensions: 435143
Number of successful extensions: 1198
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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