Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0182
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr...   400   e-112
Z66512-2|CAA91323.1|  387|Caenorhabditis elegans Hypothetical pr...    31   0.96 
Z81116-3|CAB03303.1|  346|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z81579-3|CAB04658.1|  248|Caenorhabditis elegans Hypothetical pr...    29   5.1  
Z81130-8|CAB03416.1|  347|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AY455927-3|AAR26304.1|  347|Caenorhabditis elegans phosphoglucos...    28   6.8  

>Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical protein
            T20G5.1 protein.
          Length = 1681

 Score =  400 bits (985), Expect = e-112
 Identities = 190/252 (75%), Positives = 218/252 (86%), Gaps = 20/252 (7%)
 Frame = +3

Query: 45   WDDLVRYLQMARKKARESYIESELIYAYARTGRLADLEEFISGPNHADIQKIGDRCFDDK 224
            W+DLVRYLQMARKK+RESYIE+EL++A A+TGRL +LEEFI+GPNHA I +IGDRCFD+ 
Sbjct: 1152 WEDLVRYLQMARKKSRESYIETELVFALAKTGRLTELEEFIAGPNHAQIGQIGDRCFDNG 1211

Query: 225  MYNAAKLLYNNVSNFARLAITLVHLKEFQGAVDA--------------------GEFRLS 344
            M+++AK+L+NNVSNFA+L++TLV L E+QGAVDA                    GEFRL+
Sbjct: 1212 MFDSAKILFNNVSNFAKLSVTLVRLGEYQGAVDAARKANSTKTWKQVCFSCVENGEFRLA 1271

Query: 345  QMCGLHIVVHADELEDLINYYQDRGHFDELISLLEAALGLERAHMGMFTELAILYSKYKP 524
            QMCGLHIVVHADELE+LIN+YQDRGHF+ELI+LLEAALGLERAHMGMFTELAILYSKYKP
Sbjct: 1272 QMCGLHIVVHADELEELINFYQDRGHFEELIALLEAALGLERAHMGMFTELAILYSKYKP 1331

Query: 525  VKMXEHLELFWSRVNIPXVLRAAEHAHLWSELVFLYDKYXEYDNAALTMMQHPTEAWREG 704
             KM EHLELFWSRVNIP VLRAAE AHLWSELVFLYDKY EYDNAALTMMQHPTE+WRE 
Sbjct: 1332 EKMREHLELFWSRVNIPKVLRAAEQAHLWSELVFLYDKYEEYDNAALTMMQHPTESWREQ 1391

Query: 705  HFKDIITKVANM 740
            HFK++I KVAN+
Sbjct: 1392 HFKEVIAKVANV 1403



 Score = 36.7 bits (81), Expect = 0.019
 Identities = 16/19 (84%), Positives = 16/19 (84%)
 Frame = +1

Query: 742  ELXYKAXQFYLXYKPLLLN 798
            EL YKA QFYL YKPLLLN
Sbjct: 1404 ELYYKAMQFYLDYKPLLLN 1422


>Z66512-2|CAA91323.1|  387|Caenorhabditis elegans Hypothetical
           protein F52H3.3 protein.
          Length = 387

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -1

Query: 305 FFQMHQSNSKTS-EVADVVIQEFRSVVHLI 219
           FF   Q   KT  E+ DVV++EFR ++H+I
Sbjct: 257 FFSNFQEREKTQVELEDVVLEEFRELLHVI 286


>Z81116-3|CAB03303.1|  346|Caenorhabditis elegans Hypothetical
           protein T06C12.3 protein.
          Length = 346

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 228 YNAAKLLYNNVSNFARLAITLVHLKEFQGA 317
           + +  LL  ++SNF  + I+L H K+ QGA
Sbjct: 10  FTSTSLLICSISNFTLIYISLFHSKQIQGA 39


>Z81579-3|CAB04658.1|  248|Caenorhabditis elegans Hypothetical
           protein R13H4.6 protein.
          Length = 248

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 20/57 (35%), Positives = 27/57 (47%)
 Frame = +3

Query: 315 AVDAGEFRLSQMCGLHIVVHADELEDLINYYQDRGHFDELISLLEAALGLERAHMGM 485
           A DA  F L   C + +  H  E+   + YY +  H D   ++L  ALGL  A  GM
Sbjct: 95  AYDAVTFNL---CSMGVSQHPREVR--VQYYAE-SHLDRKSAILTTALGLMAAFTGM 145


>Z81130-8|CAB03416.1|  347|Caenorhabditis elegans Hypothetical
           protein T23G11.2 protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -1

Query: 395 EVFKFVSMYYNVQSTHLRESKFTGVHSTL-KFFQMHQSNSKTSEVADVVIQE 243
           +  K    YY V   H+  SK  G  + L +F  +H++ ++   V DVV+ E
Sbjct: 57  DAMKKAKSYYIVVLEHIESSKIIGAATLLIEFKYIHEAGTR-GRVEDVVVDE 107


>AY455927-3|AAR26304.1|  347|Caenorhabditis elegans
           phosphoglucosamine acetyltransferaseprotein.
          Length = 347

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -1

Query: 395 EVFKFVSMYYNVQSTHLRESKFTGVHSTL-KFFQMHQSNSKTSEVADVVIQE 243
           +  K    YY V   H+  SK  G  + L +F  +H++ ++   V DVV+ E
Sbjct: 57  DAMKKAKSYYIVVLEHIESSKIIGAATLLIEFKYIHEAGTR-GRVEDVVVDE 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,447,022
Number of Sequences: 27780
Number of extensions: 320815
Number of successful extensions: 846
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)