Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0182
         (800 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11130.1 68416.m01349 clathrin heavy chain, putative similar ...   275   3e-74
At3g08530.1 68416.m00990 clathrin heavy chain, putative similar ...   272   1e-73
At3g22080.1 68416.m02786 meprin and TRAF homology domain-contain...    36   0.024
At5g59130.1 68418.m07411 subtilase family protein contains simil...    30   2.1  
At1g73875.1 68414.m08555 endonuclease/exonuclease/phosphatase fa...    30   2.1  
At1g69650.1 68414.m08015 meprin and TRAF homology domain-contain...    29   2.7  
At4g24240.1 68417.m03479 WRKY family transcription factor contai...    29   3.6  
At1g32660.1 68414.m04028 F-box family protein contains Pfam prof...    29   3.6  
At5g14770.1 68418.m01733 pentatricopeptide (PPR) repeat-containi...    29   4.7  
At2g04690.1 68415.m00479 cellular repressor of E1A-stimulated ge...    28   6.3  

>At3g11130.1 68416.m01349 clathrin heavy chain, putative similar to
            Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
            sapiens]
          Length = 1705

 Score =  275 bits (674), Expect = 3e-74
 Identities = 130/252 (51%), Positives = 183/252 (72%), Gaps = 20/252 (7%)
 Frame = +3

Query: 45   WDDLVRYLQMARKKARESYIESELIYAYARTGRLADLEEFISGPNHADIQKIGDRCFDDK 224
            +DDLVRYL M R+K +E  ++SELIYAYA+  RL ++EEFI  PN A++Q +GDR +D+ 
Sbjct: 1164 YDDLVRYLLMVRQKVKEPKVDSELIYAYAKIERLGEIEEFILMPNVANLQHVGDRLYDEA 1223

Query: 225  MYNAAKLLYNNVSNFARLAITLVHLKEFQGAVDAG--------------------EFRLS 344
            +Y AAK++Y  +SN+A+LA+TLV L++FQGAVDA                     EFRL+
Sbjct: 1224 LYEAAKIIYAFISNWAKLAVTLVKLQQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLA 1283

Query: 345  QMCGLHIVVHADELEDLINYYQDRGHFDELISLLEAALGLERAHMGMFTELAILYSKYKP 524
            Q+CGL+I++  D+LE++  YYQ+RG F+ELISL+E+ LGLERAHMG+FTEL +LY++Y+ 
Sbjct: 1284 QICGLNIIIQVDDLEEVSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRY 1343

Query: 525  VKMXEHLELFWSRVNIPXVLRAAEHAHLWSELVFLYDKYXEYDNAALTMMQHPTEAWREG 704
             K+ EH++LF +R+NIP ++RA +    W EL +LY +Y E+DNAA T+M H  EAW   
Sbjct: 1344 EKLMEHIKLFSTRLNIPKLIRACDEQQHWQELTYLYIQYDEFDNAATTVMNHSPEAWEHM 1403

Query: 705  HFKDIITKVANM 740
             FKDI+ KVAN+
Sbjct: 1404 QFKDIVAKVANV 1415


>At3g08530.1 68416.m00990 clathrin heavy chain, putative similar to
            Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
            sapiens]
          Length = 1703

 Score =  272 bits (668), Expect = 1e-73
 Identities = 128/252 (50%), Positives = 182/252 (72%), Gaps = 20/252 (7%)
 Frame = +3

Query: 45   WDDLVRYLQMARKKARESYIESELIYAYARTGRLADLEEFISGPNHADIQKIGDRCFDDK 224
            +DDLV+YL M R+K +E  ++SELIYAYA+  RL ++EEFI  PN A++Q +GDR +D+ 
Sbjct: 1164 YDDLVKYLLMVRQKVKEPKVDSELIYAYAKIDRLGEIEEFILMPNVANLQHVGDRLYDEA 1223

Query: 225  MYNAAKLLYNNVSNFARLAITLVHLKEFQGAVDAG--------------------EFRLS 344
            +Y AAK++Y  +SN+ +LA+TLV L++FQGAVDA                     EFRL+
Sbjct: 1224 LYEAAKIIYAFISNWGKLAVTLVKLQQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLA 1283

Query: 345  QMCGLHIVVHADELEDLINYYQDRGHFDELISLLEAALGLERAHMGMFTELAILYSKYKP 524
            Q+CGL+I++  D+LE++  YYQ+RG F+ELISL+E+ LGLERAHMG+FTEL +LY++Y+ 
Sbjct: 1284 QICGLNIIIQVDDLEEVSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRY 1343

Query: 525  VKMXEHLELFWSRVNIPXVLRAAEHAHLWSELVFLYDKYXEYDNAALTMMQHPTEAWREG 704
             K+ EH++LF +R+NIP ++RA +    W EL +LY +Y E+DNAA T+M H  EAW   
Sbjct: 1344 EKLMEHIKLFSTRLNIPKLIRACDEQQHWQELTYLYIQYDEFDNAATTVMNHSPEAWEHM 1403

Query: 705  HFKDIITKVANM 740
             FKDI+ KVAN+
Sbjct: 1404 QFKDIVAKVANV 1415


>At3g22080.1 68416.m02786 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 595

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = -1

Query: 398 DEVFKFVSMYYNVQSTHLRESKFTGVHSTLKFFQMHQSNSKTSEVAD 258
           DE   F+SMY  + ST+L  S  TGV + L FF  ++   K   + D
Sbjct: 60  DEGSGFISMYVEIDSTNLLSSPLTGVFAYLVFFVYNKKTDKYFTIKD 106



 Score = 32.3 bits (70), Expect = 0.39
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = -1

Query: 398 DEVFKFVSMYYNVQSTHLRESKFTGVHSTLKFFQMHQSNSK---TSEVADVVIQEFRSVV 228
           D+   F+SMY  + ST L  +  T V + L+FF  ++  +K      V   +   FR++ 
Sbjct: 348 DDGSGFISMYVEIDSTSLLTTPTTEVFADLRFFVFNKKENKYYTIQHVESKLFNAFRTIW 407

Query: 227 HLIVETTVTDFLD 189
            L     V  F D
Sbjct: 408 GLAQVLPVDTFTD 420


>At5g59130.1 68418.m07411 subtilase family protein contains
           similarity to prepro-cucumisin GI:807698 from [Cucumis
           melo]
          Length = 732

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +3

Query: 27  LPSKXSWDDLVRYLQMARKKARESYIESELIYAYART--GRLADLEE 161
           LPS+  +  +  ++ + ++ ARES IE  L+ +Y R+  G +A L E
Sbjct: 43  LPSRADYTPMSHHMNILQEVARESSIEGRLVRSYKRSFNGFVARLTE 89


>At1g73875.1 68414.m08555 endonuclease/exonuclease/phosphatase
           family protein contains Pfam profile PF03372:
           Endonuclease/Exonuclease/phosphatase family
          Length = 454

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 440 ADQLVKVTSVLVVIDEVFKFVSMYYNVQSTHLRESK 333
           AD+LV V+  L+ +D     + +YYNV   HL  S+
Sbjct: 97  ADKLVLVSYNLLGVDNASNHMDLYYNVPRKHLEWSR 132


>At1g69650.1 68414.m08015 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 294

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -1

Query: 383 FVSMYYNVQSTHLRESK-FTGVHSTLKFFQMHQSNSKTSEVADVVIQEF 240
           F+SMY  + S+ L ESK  T V + L+FF  ++  +K     DV I+ F
Sbjct: 67  FISMYVELDSSSLMESKPPTEVFAELRFFVYNKKQNKYF-TKDVEIKRF 114


>At4g24240.1 68417.m03479 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 353

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
 Frame = -1

Query: 389 FKFVSMYYNVQSTHLRESKFTGVHSTLKFFQM--------HQSNSKTSEVADVVIQEFRS 234
           F  ++    ++ T LRE+   G+H   +F ++         +S ++ + V DV +  F+ 
Sbjct: 20  FPAIAAAAKMEDTALREAASAGIHGVEEFLKLIGQSQQPTEKSQTEITAVTDVAVNSFKK 79

Query: 233 VVHLI 219
           V+ L+
Sbjct: 80  VISLL 84


>At1g32660.1 68414.m04028 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 446

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -1

Query: 395 EVFKFVSMYYNVQSTHLRESKFTGVHSTLKFFQMHQSNSK 276
           +V  F   YYNV++  +R  +  G+ S ++F + + S +K
Sbjct: 380 DVRSFYIFYYNVETKTMRRVRLRGIGSDIEFRRSYGSENK 419


>At5g14770.1 68418.m01733 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 938

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 312 GAVDAGEFRLSQMCGLHIVVHADELEDLINYYQDRGHFDELISLL 446
           G + + EF ++QM    ++ +      +IN Y  +G  +E +SLL
Sbjct: 378 GDLSSAEFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEAVSLL 422


>At2g04690.1 68415.m00479 cellular repressor of E1A-stimulated genes
           (CREG) family contains 1 transmembrane domain; similar
           to CREG2 (GI:24371079) [Homo sapiens] and (GI:24371081)
           [Mus musculus]; similar to cellular repressor of
           E1A-stimulated genes CREG (GI:3550343) [Homo sapiens]
          Length = 210

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 628 RNTSSDQRWACSAARSTLGMLTRDQNSSRCSXI 530
           RN   DQR + + + S LG  TRD  +  CS +
Sbjct: 100 RNALKDQRASLAISESPLGTCTRDPMNPTCSKL 132


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,528,880
Number of Sequences: 28952
Number of extensions: 297243
Number of successful extensions: 800
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)