Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0180
         (550 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   4.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   9.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   9.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   9.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   9.4  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    21   9.4  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -2

Query: 186 WLIFVIHFEDXCQKFXLSF-FXLCFQYFF 103
           ++IF +HF      F  +F   LC  YF+
Sbjct: 89  FIIFTVHFLLCTYYFYYAFIILLCVYYFY 117



 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = -1

Query: 238 LLFSYCHFLTFEIYPFLLAHLCHTF 164
           + + YC F+ F ++   L  + H F
Sbjct: 146 IYYFYCAFIIFTVHLLFLLCIYHFF 170


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 123  LCFQYFFVKWRWLQYIEXPFHQF 55
            L F +FF     +Q++   FH+F
Sbjct: 1328 LVFVFFFALILVIQFVAMLFHRF 1350


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 123  LCFQYFFVKWRWLQYIEXPFHQF 55
            L F +FF     +Q++   FH+F
Sbjct: 1328 LVFVFFFALILVIQFVAMLFHRF 1350


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 123  LCFQYFFVKWRWLQYIEXPFHQF 55
            L F +FF     +Q++   FH+F
Sbjct: 1328 LVFVFFFALILVIQFVAMLFHRF 1350


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 123  LCFQYFFVKWRWLQYIEXPFHQF 55
            L F +FF     +Q++   FH+F
Sbjct: 1328 LVFVFFFALILVIQFVAMLFHRF 1350


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 238 LLFSYCHFLTFEIYPFLLAHLCH 170
           L+FSYC  +T  I     A   H
Sbjct: 157 LIFSYCPIVTTGIIKIQFATCAH 179


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,256
Number of Sequences: 336
Number of extensions: 1831
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)