Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0180
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    26   3.2  
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    25   7.3  
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy...    25   9.7  

>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 186 WLIFVIHFEDXCQKFXLSFFXLCFQY 109
           W++F+IH      +F LSF  + F +
Sbjct: 482 WILFIIHRPTFILRFILSFVNILFDW 507


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = -2

Query: 186 WLI-FVIHFEDXCQKFXLSFFXL-CFQYFFVKWRWLQYIEXPFHQFXCSXLPIFEQDXXH 13
           W I F  H     ++F +  + + CF  F ++  W   +    HQF    + IF  +   
Sbjct: 311 WRIRFPFHKSINHKRFPMFIYAIGCFINFILRVTWSMKLHPRLHQFHEYEMGIFSFEMLE 370

Query: 12  XLR 4
            LR
Sbjct: 371 ILR 373


>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 427

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 166 MYDKDEPXEMGRSQTSRN 219
           +++K+EP E GR+ +S N
Sbjct: 361 LFEKEEPEEFGRATSSSN 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,721,207
Number of Sequences: 5004
Number of extensions: 30312
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)